Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021725
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical pr...    56   2e-08

>Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical
           protein T27F2.1 protein.
          Length = 535

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = -2

Query: 633 SKGIDSGYGEDDAYNVYDKPWRNQDNVGAHIYRPSRHADRDSTG 502
           ++G+DSG  +DD YN YD  WR  D+V  H+YRPS++ D D  G
Sbjct: 420 TQGLDSGAMDDDTYNPYDAAWRGGDSVQQHVYRPSKNLDNDVYG 463



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 505 GDLEAVANTR-RFVADKEFAGTSSSNTRSGPVQFEKD 398
           GDL+ +   + RFVADK F+G   S+  SGPVQFEKD
Sbjct: 464 GDLDKIIEQKNRFVADKGFSGAEGSSRGSGPVQFEKD 500


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,673,092
Number of Sequences: 27780
Number of extensions: 228490
Number of successful extensions: 869
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)