Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021725
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    31   0.012
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    31   0.012
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.81 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 475  RFVADKEFAGTSSSNTRSGPVQFEKDAPSRDESSRSN 365
            R V+D  + GTSS+++   P+  +K  P R  SSRS+
Sbjct: 1812 RAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSRSS 1848


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 475  RFVADKEFAGTSSSNTRSGPVQFEKDAPSRDESSRSN 365
            R V+D  + GTSS+++   P+  +K  P R  SSRS+
Sbjct: 1808 RAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSRSS 1844


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 451 AGTSSSNTRSGPVQFEKDAPSRDESSRSNQSEADFDPFGLDRFLSEAK 308
           AG +  ++ SG      D P    S+ SN+ EA+ +      FLSEAK
Sbjct: 256 AGNNEDSSDSGAAA--SDRPPA--SASSNEHEAESEHTSTPNFLSEAK 299



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 465 RTKSSPAPVAPTPALDRCSLRR 400
           R  S P PV PTP   +  LRR
Sbjct: 152 RGGSLPTPVTPTPTTVQQLLRR 173



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = -2

Query: 489 SLTRADSWRTKSSPAPVAPTPALDRCSLRRMLQAETNPLAATSRR 355
           S  R  S  T  +P P      L R  +RR  +   +P   T+++
Sbjct: 149 SFPRGGSLPTPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAKK 193


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 111 FEGFIRGTVWNESSNGTED 55
           F GF    +WN ++N +ED
Sbjct: 107 FPGFPGEEMWNPNTNISED 125


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 111 FEGFIRGTVWNESSNGTED 55
           F GF    +WN ++N +ED
Sbjct: 107 FPGFPGEEMWNPNTNISED 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,047
Number of Sequences: 438
Number of extensions: 3336
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)