Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021725
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77180.1 68414.m08991 chromatin protein family contains Pfam ... 39 0.003
At4g35510.1 68417.m05048 expressed protein 33 0.21
At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to A... 30 1.5
At3g09000.1 68416.m01053 proline-rich family protein 29 1.9
At5g39410.1 68418.m04774 expressed protein 29 3.4
At4g39840.1 68417.m05645 expressed protein 29 3.4
At1g53165.1 68414.m06023 protein kinase, putative similar to ser... 29 3.4
At3g55060.1 68416.m06115 expressed protein contains weak similar... 28 4.5
At3g53840.1 68416.m05948 protein kinase family protein contains ... 28 4.5
At2g28625.1 68415.m03480 expressed protein 28 5.9
At1g17665.1 68414.m02187 expressed protein 28 5.9
At1g56460.1 68414.m06493 PAPA-1-like family protein / zinc finge... 27 7.8
At1g10410.1 68414.m01173 expressed protein similar to ESTs gb|N9... 27 7.8
>At1g77180.1 68414.m08991 chromatin protein family contains Pfam
domain, PF02731: SKIP/SNW domain found in chromatin
proteins.
Length = 613
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 630 KGIDSGYGEDDAYNVYDKPWRNQDNVGAHIYRPSRHADRDSTG 502
KG+DSG+ DD YN+YDK + +Y+P + D + G
Sbjct: 468 KGMDSGFAADDQYNLYDKGLFTAQPTLSTLYKPKKDNDEEMYG 510
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = -1
Query: 499 LEAVANTRRFVADKEFAGTSS--SNTRSGPVQFEKDAPSRDESSRSNQSEADFDPFGLDR 326
L+ + NT RF DK F G S + R PV+FEK E + DPFGL++
Sbjct: 516 LDKIKNTERFKPDKAFTGASERVGSKRDRPVEFEK--------------EEEQDPFGLEK 561
Query: 325 FLSEAKR 305
++S+ K+
Sbjct: 562 WVSDLKK 568
>At4g35510.1 68417.m05048 expressed protein
Length = 333
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 309 FASLKNRSRPNGSKSASDWLLREDSSLLGASFSNCTGPERVLELLVPANSLS 464
FAS + S NGS SAS + +LL + F+N PE ++E A +L+
Sbjct: 43 FASSSSTSNSNGSSSASTNVQTHLGNLLSSPFNNDQSPEELVEATRSAAALA 94
>At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to
ATPase subunit 6 GI:515963 from [Raphanus sativus];
contains Pfam profile: PF00119 ATP synthase, A subunit
Length = 385
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 31 LLITFTLIVLCTVRGFIPYSST 96
+L+TF ++ C ++G IPYS T
Sbjct: 224 ILVTFLFLLFCNLQGMIPYSFT 245
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = -2
Query: 534 PSRHADRDSTGTWRPSLTRADSWRTKSSPAPVAPTPALDRCSLRRMLQAETNPLAATSRR 355
P+R + +T T RP TRA + R+ + + T A R + T + ++R
Sbjct: 162 PTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAA--RATTSTAAPRTTTTSSGSARS 219
Query: 354 LTSIRSVWIGS*ARRREPTSR 292
T RS S A ++P SR
Sbjct: 220 ATPTRSNPRPSSASSKKPVSR 240
>At5g39410.1 68418.m04774 expressed protein
Length = 454
Score = 28.7 bits (61), Expect = 3.4
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +3
Query: 378 DSSLLGASFSNCTGPERVLELLVPANSLSATNLRVLATASRSP*SPGRRAGWADRCARRR 557
D +LGAS TG V E L + S++ L+ LA A R+P + WA AR
Sbjct: 12 DMVILGAS--GFTGKYVVREALKFLQTPSSSPLKSLALAGRNPTRLTQSLEWA---ARPN 66
Query: 558 CPGSATACRTRCTRHP--LRSRC 620
P S+ A T T P LR C
Sbjct: 67 PPPSSVAILTADTSDPDSLRRLC 89
>At4g39840.1 68417.m05645 expressed protein
Length = 451
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 436 SNTRSGPVQFEKDAPSRDESSRSNQSEADFDPFGLD 329
S+ S P +K PS ++S QSE + PF LD
Sbjct: 179 SSKLSSPPSEKKSQPSSKPVTKSKQSEKEIKPFWLD 214
>At1g53165.1 68414.m06023 protein kinase, putative similar to
serine/threonine protein kinase 24 [Homo sapiens]
SWISS-PROT:Q9Y6E0
Length = 1007
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 546 HIYRPSRHADRDSTGTWRPSLTRADSW--RTKSSPAPVAPTPALDRCSLRRMLQAET 382
H + S R + T + R+DSW R+ S +P + TP C++ ++ + T
Sbjct: 61 HSFPTSTITTRSVSRTTSENTFRSDSWSSRSSDSSSPTSYTPRTSTCNIFKITSSST 117
>At3g55060.1 68416.m06115 expressed protein contains weak similarity
to intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae];
expression supported by MPSS
Length = 896
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 460 KEFAGTSSSNTRSGPVQFEKDAPSRDESSRSNQSEADFD 344
K F SS N V EK+A S+ + S+Q+E +FD
Sbjct: 3 KLFFFRSSGNGNDKQVNCEKEADSKMRTQASSQAEQEFD 41
>At3g53840.1 68416.m05948 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 639
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 389 AWSILLKLHRSRAGVGATGAGELFVRHESARVSD 490
+W+ + KLHR+ + +TG +F E + +D
Sbjct: 319 SWASVRKLHRNLLSINSTGLDRIFTGKEIVKATD 352
>At2g28625.1 68415.m03480 expressed protein
Length = 98
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 463 DKEFAGTSSSNTRSGPVQFEKDAPSRDESSRSNQSEADFDPFG 335
++E G+SSS++ S PV + D D SS + F P G
Sbjct: 3 EEERVGSSSSSSSSLPVSYGVDCEKYDFSSSVSSLSQPFSPEG 45
>At1g17665.1 68414.m02187 expressed protein
Length = 338
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 308 LRLAQEPIQTERIEVSLRLVAARGFVSAWSILLKLHRSRAGV 433
L++ P+ + +SL +A FVSA LLK RSRA +
Sbjct: 9 LKITLNPLMYPFLVLSLLTLALFSFVSAIFFLLKASRSRAAL 50
>At1g56460.1 68414.m06493 PAPA-1-like family protein / zinc finger
(HIT type) family protein contains Pfam profile PF04795:
PAPA-1-like conserved region
Length = 502
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -2
Query: 531 SRHADRDSTGTWRPSLTRADSWRTKSSPAPVAPTPALDRCSLRRMLQAETNPLAATSR 358
S HA D+ G + ++ TK P+ D C+ R +A TNP+ ++R
Sbjct: 146 SSHASDDALGIGQTYQEISNERSTKLRGTPLDTASKSDSCNDTRDSKANTNPIRKSNR 203
>At1g10410.1 68414.m01173 expressed protein similar to ESTs
gb|N96021 and gb|N96863
Length = 485
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 388 RDESSRSNQSEADFDPFGLDRFLSEAK 308
R++ S A ++PFG+D FLSE K
Sbjct: 249 REKKKEFAPSHAAYNPFGVDVFLSEHK 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,100,500
Number of Sequences: 28952
Number of extensions: 216617
Number of successful extensions: 824
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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