Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021724
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    29   0.85 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.6  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    27   3.4  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   4.5  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    26   6.0  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   6.0  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 527 PDASNTAAYWECRAALEERRGDLPASVQCWEEAIAKGTEHS-VVEANLDQ 673
           P A+NTA+  E     +E       +V+  +EA+ K  EHS + +AN  Q
Sbjct: 756 PSATNTASVSEINFDSDEEEDIRRLAVESAQEAVQKAREHSQLFDANRQQ 805


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 267 DSDDDSYVENMNENNKHVKDTVNWRRASCVSESVDFN 377
           DS DDSY++N+N    +V D  +    S  S+ V+F+
Sbjct: 44  DSHDDSYLDNVNPFEYNVADDED--TISMTSDGVEFH 78


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
          subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 13 IKSERKKVKFMTPIPQNFNTPRPEE 87
          IK +RK+ +  TP  +NF T  P+E
Sbjct: 23 IKEDRKQFEENTPSKKNFETQSPDE 47


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 62  F*GIGVMNLTFFLSLLI 12
           F GIG+  +TFF+SLLI
Sbjct: 227 FSGIGIFIITFFISLLI 243


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 255 ALNSDSDDDSYVENMNENNKHVKDTVNWRRASCVSESVDFNESADSTLTSTDVF 416
           ALN  +D+D+Y+ + +E  K  ++ V         + ++   S+DS  TST+ F
Sbjct: 261 ALNKYTDNDTYIADDDEPKKDNQNVVE-------EKQINLTTSSDSHPTSTEDF 307


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 252  YALNSDSDDDSYVENMNENNKHVKDTVNWRRASCVSESVDFNESADSTLTSTDVF 416
            +A ++D DDD+    M    +  K+ V +  + CVSE      S ++   S+ VF
Sbjct: 881  FAASNDPDDDTVFSWMKNFKQSKKEVVPFTFSVCVSE---HGNSTNADAESSGVF 932


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 541 VGRVRESLPYSRSQRALCSQSKPSFSKSVRSFKAPSNISS 422
           + R  E   +   Q+ + + +K  F KS+     PSNISS
Sbjct: 154 LARANEVAEFKHQQKKIVAINKGRFPKSLLLQYVPSNISS 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,961
Number of Sequences: 5004
Number of extensions: 50844
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)