Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021724
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1129 - 24513568-24514296,24515380-24515817                       29   2.7  
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093...    29   3.5  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   6.2  
10_08_1045 - 22535516-22535593,22535681-22535756,22535843-225359...    28   8.2  
10_03_0016 - 7099862-7099967,7100059-7100357,7101862-7102171,710...    28   8.2  

>08_02_1129 - 24513568-24514296,24515380-24515817
          Length = 388

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +2

Query: 476 LRLGAKCSLAPAIRERFPDASNTAAYWECRAALEERRGDLPASVQCWEEAIAKG 637
           L L A  +LA A++ R        AYW     L   RGD  A  +C +E   KG
Sbjct: 282 LSLVASLALAAAVQLR------VCAYWRASRRLRRERGDARALARCVQELRMKG 329


>12_02_0693 -
           22207582-22207620,22208421-22208597,22209258-22209347,
           22210215-22210280,22210473-22210570,22210669-22210789,
           22210875-22212477,22213332-22213915
          Length = 925

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 276 DDSYVENMNENNKHVKDTVNWRRASCVSESVDF--NESADSTLTSTDVFKIDE 428
           DD+Y    N+N+ H + + N   +S + E  DF   +S  S   + + F  +E
Sbjct: 408 DDNYPRRSNQNHNHHRSSSNQAGSSSIDELEDFAMGKSQSSAYDNANPFNEEE 460


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 100 LKSWLQKRGKSLDTYHHLQCFGINHLSNKDIVPLA 204
           L +WL  + K   + HH       +LSNK + P A
Sbjct: 450 LMNWLNGKKKRTGSVHHTVAHPAGNLSNKKVTPTA 484


>10_08_1045 -
           22535516-22535593,22535681-22535756,22535843-22535946,
           22536048-22536176,22536539-22536700,22537029-22537259,
           22537345-22537428,22537515-22537583,22537671-22537739,
           22537827-22537889,22537913-22538052,22538527-22539097
          Length = 591

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/83 (22%), Positives = 36/83 (43%)
 Frame = +1

Query: 7   SAIKSERKKVKFMTPIPQNFNTPRPEELQARLKSWLQKRGKSLDTYHHLQCFGINHLSNK 186
           S IK+  K+V   T    + + P  E L  +L   ++++GK +      Q    N + + 
Sbjct: 313 SDIKTSEKRVDSTTHATSHKDRPETESLTRKLIMLIEEQGKEMKEMKQNQQSMHNQIQSL 372

Query: 187 DIVPLAFEELPQFNYEEENKENM 255
             +  AF+E       + +K N+
Sbjct: 373 TNIIAAFKEEKTIPTSKNSKPNV 395


>10_03_0016 -
           7099862-7099967,7100059-7100357,7101862-7102171,
           7104402-7105054,7105266-7105554,7106549-7106634
          Length = 580

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +3

Query: 60  EFQYATPGRTTSKIKILVTKT-WQIIRHLPSFAMFWDQSFIEQRHC 194
           EF+     RTT K+K       W++  + P     W  S +EQ  C
Sbjct: 234 EFRVKVSNRTTYKVKCTQAGCPWRVHGYKPQHDTLWVDSRVEQHTC 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,604,852
Number of Sequences: 37544
Number of extensions: 323081
Number of successful extensions: 1000
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)