Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021724
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36754| Best HMM Match : DUF308 (HMM E-Value=1.1)                    30   1.6  
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          30   2.1  
SB_56028| Best HMM Match : Pyridox_oxidase (HMM E-Value=1.7)           29   4.8  
SB_31348| Best HMM Match : ERM (HMM E-Value=0)                         29   4.8  
SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_8371| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 28   6.3  
SB_56351| Best HMM Match : C6 (HMM E-Value=5.6)                        28   8.4  
SB_51053| Best HMM Match : Gp5_C (HMM E-Value=0.00055)                 28   8.4  
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_8763| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_36754| Best HMM Match : DUF308 (HMM E-Value=1.1)
          Length = 179

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 267 DSDDDSYVENMNENNKHVKDTVNWRRASCVSESV 368
           D DDD Y +N++E+N  +  TV   RA+ + E+V
Sbjct: 80  DDDDDGYDDNVDEDNNGI--TVRVARAAVIGENV 111


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 258 LNSDSDDDSYVENMNENNKHVKDTVNWRRASCVSESVDFNESADSTLTSTD 410
           L+++SDDD+  EN+   +  V D V    AS VS+S D N+  +    + D
Sbjct: 195 LSTNSDDDNVKENVIPADITVADNVG--IASAVSKSADLNDDINDASKNQD 243


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 249  EYALNSDSDDDSYVENMNENNKHVKDTVNWRRASCVSESVDFNESADSTL 398
            ++ALNS SD   + ENM   +  +  TV     + + E ++F  + DS +
Sbjct: 1040 KFALNSSSDFKDFGENMESQSIAIMKTVKGDVQNALDEIMNFTITVDSLI 1089


>SB_56028| Best HMM Match : Pyridox_oxidase (HMM E-Value=1.7)
          Length = 695

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 389 VSTLIEVNAFTDAASSPPIHCIFDVFVIL-IHVFDIRIVIAV 267
           V TL+ V    D  ++ PI  + D+FV +   + D+R ++AV
Sbjct: 80  VRTLVAVGDTKDVTATAPIDVVVDLFVAMETFIDDVRTLVAV 121


>SB_31348| Best HMM Match : ERM (HMM E-Value=0)
          Length = 665

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 261 NSDSDDDSYVENMNENNKHVK--DTVNWRRASCVSESVDFNESADS 392
           N   +DDS ++N N++NK +   DT+     +  SES+  + S DS
Sbjct: 465 NDIDNDDSEIKNKNDSNKQMDSVDTMESIALASSSESIKRHGSVDS 510


>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 545 AAYWECRAALEERRGDLPASVQCWEEAI 628
           A +W CRA + ER+GD    V  +E+A+
Sbjct: 539 AEFWVCRAKIAERQGDDGRVVCFFEQAL 566


>SB_8371| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 323

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 261 NSDSDDDSY-VENMNENNKHVKDTVNWRRASCVSESVDFNESAD 389
           N+ S DD+  ++N+ E N+ + DT+   + +C ++  D ++  D
Sbjct: 147 NAPSSDDALDIQNIKEENEKLNDTIRKLQDNCDNDDDDDDDDDD 190


>SB_56351| Best HMM Match : C6 (HMM E-Value=5.6)
          Length = 149

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 261 NSDSDDDSYVENMNENNKHVK--DTVNWRRASCVSESVDFNESAD 389
           N    DDS + N N++NK +   DT+     +  SES+  + S D
Sbjct: 22  NDVDKDDSEINNKNDSNKQMDSVDTMEILALASSSESIKHHSSVD 66


>SB_51053| Best HMM Match : Gp5_C (HMM E-Value=0.00055)
          Length = 199

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 261 NSDSDDDSYVENMNENNKHVKDTVNWRRASCVSESVDFNESADSTLTST 407
           NSDSD DS   + + +N +   TV     +  + +     +A +T T+T
Sbjct: 12  NSDSDSDSNSNSNSNSNSNSNSTVTATATATATVTATVTATATATATAT 60


>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 234 RGK*REYALNSDSDDDSYVENMNENNKHV-KDTVNWRRASCVSESVDFNESAD 389
           R K R   +N DS  D Y ++ ++NNK    +T   +R + ++   D  ES++
Sbjct: 15  RKKFRRRIVNDDSTSDDYDDDSDDNNKLTPANTSRGKRKAHIAFESDEEESSE 67


>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1604

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 521 RFPDASNTAAYWECRAALEERRGDLPASVQCWEEAI 628
           +FPD SN   Y EC+  +  +R D P   Q W + +
Sbjct: 426 KFPDPSNINGYIECKNNI-PKRVDCPDVHQHWNDTL 460


>SB_8763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 696 SCMNLSSNWSRFASTTECSV-PLAIASSQHCTEAGKSPRLSSR 571
           SC+ L+SNWS   +  E ++ P    ++ H T  G     SSR
Sbjct: 455 SCLTLTSNWSLLVTIKESALWPNVGQNTTHSTPLGDFKARSSR 497


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,335,053
Number of Sequences: 59808
Number of extensions: 379040
Number of successful extensions: 1342
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)