Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021724
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    36   0.021
AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF016422-4|AAG24172.1|  320|Caenorhabditis elegans Hypothetical ...    29   4.2  

>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
            protein H11E01.3 protein.
          Length = 1464

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = -2

Query: 654  TTECSVPLAIASSQHCTEAGKSPRLSSRAALHSQ*AAVLDASGNLSLIAGANEHFAPNRS 475
            T + + PL+ A+S H  +A +SP      +LHSQ +  L+     S +  A +  A  +S
Sbjct: 936  TMQAAAPLSPAASDHAEQARESPSFERAPSLHSQLSGNLEHDDENSAVVEAGQEPA-TQS 994

Query: 474  PLSVNQ*G 451
            P+ + Q G
Sbjct: 995  PIPLEQEG 1002


>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 479 RLGAKCSLAPAIRERFPDASNTAAYWECRAALE 577
           +L AKCSLA  I     +++      ECRAALE
Sbjct: 359 KLAAKCSLATRIDALSDESATNEIGIECRAALE 391


>Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical
           protein F32H2.1b protein.
          Length = 928

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +1

Query: 61  NFNTPRPEELQARLKSWLQKRGKSLDTYHHLQCF--GINHLSNKDIVPLAFEELPQFNYE 234
           N  +    ++    KS L     S D +  LQ    G+N LS +   PL      QFN++
Sbjct: 698 NSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQKARSGLNRLSAEHFYPLDVSLAQQFNFK 757

Query: 235 EENKENM 255
            + +E +
Sbjct: 758 NDEREGL 764


>Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical
           protein F32H2.1a protein.
          Length = 944

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +1

Query: 61  NFNTPRPEELQARLKSWLQKRGKSLDTYHHLQCF--GINHLSNKDIVPLAFEELPQFNYE 234
           N  +    ++    KS L     S D +  LQ    G+N LS +   PL      QFN++
Sbjct: 698 NSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQKARSGLNRLSAEHFYPLDVSLAQQFNFK 757

Query: 235 EENKENM 255
            + +E +
Sbjct: 758 NDEREGL 764


>AF016422-4|AAG24172.1|  320|Caenorhabditis elegans Hypothetical
           protein R09E12.3 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +2

Query: 581 RRGDLPASVQCWEEAIAKGTEHSVVEANLDQLLDKFMQLK 700
           ++GD P +++ + EA+ +  E++++ +N    L K M+ +
Sbjct: 152 KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQ 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,484
Number of Sequences: 27780
Number of extensions: 283944
Number of successful extensions: 930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)