Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021724
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23882.1 68417.m03434 heavy-metal-associated domain-containin...    30   1.7  
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica...    29   3.0  
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    29   3.0  
At5g51480.1 68418.m06385 multi-copper oxidase type I family prot...    29   3.9  
At4g18090.1 68417.m02691 hypothetical protein                          28   5.2  
At3g29320.1 68416.m03682 glucan phosphorylase, putative similar ...    28   6.8  
At1g71930.1 68414.m08315 no apical meristem (NAM) family protein...    28   6.8  
At5g06810.1 68418.m00770 mitochondrial transcription termination...    27   9.0  

>At4g23882.1 68417.m03434 heavy-metal-associated domain-containing
           protein
          Length = 284

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +1

Query: 28  KKVKFMTPIPQNFNTPRPEELQARLKSWLQKRGKSLDTYHHLQCFGINHLSNKDIVPLAF 207
           KK + ++ +  N+++  P   +      ++K+ K       L CFG     N  I P+A 
Sbjct: 138 KKAELVSFLGDNYSSHVPRTPEQNQNKTMEKKKKKPTKCCLLMCFGNKRSKNTKIEPMA- 196

Query: 208 EELPQFNYEEENKEN 252
             +P + Y     EN
Sbjct: 197 --IPNWQYRGVGNEN 209


>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|P41410 DNA
           repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1132

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 267 DSDDDSYVENMNENNKHVKDTVNWRRASCVSESV-DFNE 380
           D DD  +V  +   N HV+D  N   AS +S  V DF+E
Sbjct: 134 DDDDVVFVGTVQRENDHVEDDDNVGSASVISPRVCDFDE 172


>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2271

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +3

Query: 42   HDSDTSEFQYATPG-RTTSKI---KILVTKTWQIIRHLPSFAMFWDQSFIEQRHCTFS 203
            HD   S   Y   G R   +I   ++ +   W + RHLP +   W Q+      C+FS
Sbjct: 1894 HDFCASPLTYNYAGIRADDEISLDEVTIEPKWSVARHLPEYIEVWRQN-PHSNQCSFS 1950


>At5g51480.1 68418.m06385 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase;
           similar to pollen-specific protein
          Length = 592

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 49  PIPQNFNTPRPEELQARLKSWLQKRGKSLDTYHHLQCFGINHLSNKDIVPLAFEE 213
           PIP N+N     +L+ ++ S+      SL+       FG   ++N+D+VP+ F E
Sbjct: 104 PIPPNWNFTYDFQLKDQIGSYFYS--PSLNFQRASGGFGALIINNRDLVPIPFTE 156


>At4g18090.1 68417.m02691 hypothetical protein 
          Length = 278

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 267 DSDDDSYVENMNENNKHVKDTVNWRRASCVSESVDFNESADSTLTSTDVFKI 422
           D  D+     + + NK +K T   RR S     +DF+ +   TLT +D+ +I
Sbjct: 58  DGSDEENPTILEKKNKKLKKTR--RRGSMKKTPIDFSCTVSQTLTHSDLVEI 107


>At3g29320.1 68416.m03682 glucan phosphorylase, putative similar to
            alpha-glucan phosphorylase, L isozyme 1 precursor
            GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4),
            691-695 (1989))
          Length = 962

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 273  DDDSYVENMNENNKHVKDTVNWRRASCVSESVDFNESADSTL--TSTDVFKIDEI 431
            D  SY+E   + ++  +D   W R S ++ +  F  S+D T+   + D++ I ++
Sbjct: 905  DFPSYIECQEKVDEAYRDQKRWTRMSIMNTAGSFKFSSDRTIHEYAKDIWNIKQV 959


>At1g71930.1 68414.m08315 no apical meristem (NAM) family protein
           similar to NAM GB:CAA63101 from [Petunia x hybrida]
          Length = 324

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 534 ASGNLSLIAGANEHFAPNRSPLSVNQ*GHSRLP 436
           +S NL+ +  +N H+ PN +  S++Q G+  LP
Sbjct: 201 SSHNLNQMLMSNNHYNPNNTSSSMHQYGNIELP 233


>At5g06810.1 68418.m00770 mitochondrial transcription termination
            factor-related / mTERF-related contains Pfam profile
            PF02536: mTERF
          Length = 1141

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = +1

Query: 16   KSERKKVKFMTPIPQNFNTPRPEELQARLKSWLQKRGKSLDTYHHLQCFGINHLSNKDIV 195
            KS+  K +F+  +    N+   EE++  LK++  K  +  + ++ L  FG+     KD+V
Sbjct: 982  KSKTMKTQFLLDLGYKENS---EEMERALKNFRGKGSELRERFNVLVSFGLTEKDVKDMV 1038

Query: 196  PLAFEELPQFNYEEENKENML 258
                  L Q     E+K N L
Sbjct: 1039 KACPSILTQACDILESKVNYL 1059


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,275
Number of Sequences: 28952
Number of extensions: 262880
Number of successful extensions: 892
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)