Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021722
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0706 + 20034534-20034860,20034988-20035368                       29   2.2  
02_03_0397 + 18574277-18574618,18574740-18574848,18574854-18575872     28   5.1  

>10_08_0706 + 20034534-20034860,20034988-20035368
          Length = 235

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 220 CRKDKDFFSGLFIGSREVTFSAFVSFSH 137
           C K K FF G  +G  +VT  A VS+ H
Sbjct: 147 CSKGKPFFGGDAVGYLDVTLGALVSWVH 174


>02_03_0397 + 18574277-18574618,18574740-18574848,18574854-18575872
          Length = 489

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 489 PLKDIILREQYIHLNFKNYLPARYPH 566
           P K I++ +  +H +  NYL  R+PH
Sbjct: 269 PDKSIVVHKDSVHADLYNYLCERFPH 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,437,911
Number of Sequences: 37544
Number of extensions: 259202
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)