Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021722
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6761| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_29585| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07)                 27   9.1  

>SB_6761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 152 KGAERNFSGSYKESTEKVFIL--SAAEVSK*HLPRAAV-VCVHSQIRATKPSSNHEKGYI 322
           K A +N   S  + TE+ F L   AA   +  L R  V +C+ S + A +P   H++GY 
Sbjct: 59  KMATQNEYASQNKRTERTFFLITKAALCLEYILGRFVVLICLSSVVSAIQPFRLHKEGYP 118

Query: 323 NDH 331
             H
Sbjct: 119 VSH 121


>SB_29585| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07)
          Length = 408

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 122 TDIKQLIYITYK*TTHLNTFKPEETVNRQNKSTQIHSSR 6
           TD +     TY+ +TH+NT +    V    +STQ++S +
Sbjct: 290 TDQRSTHVNTYQRSTHVNTDQRSTHVKTDQRSTQVNSDQ 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,470,955
Number of Sequences: 59808
Number of extensions: 335709
Number of successful extensions: 672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)