Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021722
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.2  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 162 NVTSRDPIKSPLKKSLSFLQLRCRNDIYRALPSCVSIRKYVRPNRARITR 311
           N +++D IKS  K       + C   IY+ +  C    +  RP  A +T+
Sbjct: 841 NWSNQDVIKSIEKGYRLPAPMDCPEAIYQLMLDCWQKERTHRPTFANLTQ 890


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = +2

Query: 11  RSEFVWIYFVCLLFLQV*MCLNVLFIYMLCI 103
           + ++ W +   L+     +C+++++I ML I
Sbjct: 385 KKQYTWRHTSVLIGWSAFLCISLVYIIMLII 415


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 180 PIKSPLKKSLSFLQLRCRNDIY 245
           P++   K +++   L+  NDIY
Sbjct: 141 PVRGAGKSNITMYDLKSHNDIY 162


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 358 KDENDPSKMVVIYITFLVIRARFG 287
           KD  +   M+V  ITF ++  +FG
Sbjct: 235 KDGTNVMGMIVFCITFGLVAGQFG 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,389
Number of Sequences: 438
Number of extensions: 2880
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)