Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021721
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.8  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   3.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 594 GSPQARRSLKCHPCPQSAFIIFFGIVGDSTPHLXD*TESNTTSTRSPPTETWTSTN 427
           G+ Q R+ LKC  C QS     F  + + T H+   T+  T         +W S++
Sbjct: 471 GAEQTRQILKCMWCGQS-----FRSLAEMTSHMQQ-TQHYTNIISQEQIISWRSSD 520



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 594 GSPQARRSLKCHPCPQS 544
           G+ QA+  LKC  C QS
Sbjct: 370 GAEQAKNVLKCVWCKQS 386


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 413 CSTHCNSIRVVADNDTGRPDR 351
           CS +C   +++ + D   PDR
Sbjct: 278 CSEYCRVFKMLQEEDIFTPDR 298


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 233 HAILPLHRGHVAETGEDSRRGACGRAGQK 319
           HA+ P H  HV  T      GA    G++
Sbjct: 47  HAMHPYHANHVNPTANHVMGGAVPDVGKR 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,848
Number of Sequences: 336
Number of extensions: 1903
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)