Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021721
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   5.3  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   5.3  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   7.0  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   7.0  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   7.0  

>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 303 PHAPLRESSPVSATWPRWRGNIAWMRVPPKPS 208
           PHAP   S+PV++  P  +  +  + VP K S
Sbjct: 589 PHAPAVSSTPVTSAPPVSQTKVTKVSVPKKTS 620


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 404 HCNSIRVVADNDTGRPDRTASCLTAFAASSAQLYHMRLYESPLPSRRHGLGGGVI 240
           + N IR + +N   RPDRT +   +  A     + +R    PL + +     GV+
Sbjct: 333 YLNLIRYILENGQSRPDRTGTGTRSVFAPPQLRFSLRNNTLPLLTTKRVFLRGVL 387


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 23  NDTRNHVSPSSCVASNLLRCSTCGPLA 103
           +D++  +  +S +ASNLLR S+ G L+
Sbjct: 38  SDSQKFIPSASPIASNLLRVSSYGKLS 64


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 520 RRRFNSSSXRLDRVEHDEHAESADRDLDL 434
           RRRFN SS   D++E +   E++ +++ L
Sbjct: 14  RRRFNDSSSEEDKLEKNIQDETSIKEVSL 42


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 350 TASCLTAFAASSAQLYHMRLYESPLPS 270
           T +CLT+    S++L HM  +   LPS
Sbjct: 469 TFACLTSKQLVSSELLHMTTFTQSLPS 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,203
Number of Sequences: 5004
Number of extensions: 31567
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)