Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021721
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    31   0.77 
02_02_0183 + 7576901-7576908,7577666-7578176                           29   4.1  
09_06_0360 - 22510132-22510433,22510577-22510716,22510979-225110...    28   5.4  
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601...    28   5.4  
12_01_0175 + 1304138-1304255,1304597-1304793,1304873-1304953,130...    27   9.5  
11_01_0174 + 1394229-1394346,1394695-1394891,1394972-1395052,139...    27   9.5  

>10_08_0267 -
           16333239-16333820,16333904-16334842,16334920-16335172,
           16336837-16337063,16338189-16339388
          Length = 1066

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +2

Query: 275 GEDSRRGACGRAGQKRQRRL*DKRPYGQDAQCRCQRLLGWSCSGCYRRRSELVEVQVSVG 454
           G DSRR  C   G K +    +   + Q++Q + ++    +CS   R+RS +    V  G
Sbjct: 789 GPDSRRKLCNACGNKYRSGQLNSTTFSQNSQEQKKKSKSSACSR-ERKRSAVAATVVVGG 847

Query: 455 GLR 463
           GLR
Sbjct: 848 GLR 850


>02_02_0183 + 7576901-7576908,7577666-7578176
          Length = 172

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +2

Query: 257 GHVAETGEDSRRGACGRAGQKRQRRL*DKRPYG 355
           G VA      RR  CGRAG KR +R  D  P G
Sbjct: 126 GSVARWRRWRRRRRCGRAGWKRGQRDGDAEPEG 158


>09_06_0360 -
           22510132-22510433,22510577-22510716,22510979-22511049,
           22511152-22511352,22511541-22511786,22512148-22512209,
           22512314-22512620
          Length = 442

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 261 WPRWRGNIAWMRVPPKPSLEL 199
           W RWR ++AW+    +P+L+L
Sbjct: 69  WRRWRPDVAWLPKALEPALQL 89


>05_04_0299 -
           19958776-19958858,19958883-19959012,19960131-19960175,
           19960252-19960370,19960450-19960543,19961824-19961985,
           19962117-19962266,19962472-19962537,19962934-19962981,
           19963654-19963866,19963953-19964078,19964155-19964232,
           19964600-19964671,19965522-19965953,19966863-19966925,
           19967497-19967898
          Length = 760

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 185 TIPPLSSRLGLGGTRIHAILPLH 253
           T+PP S RLG+  +++H + P H
Sbjct: 638 TLPPSSYRLGVRPSKLHELFPSH 660


>12_01_0175 +
           1304138-1304255,1304597-1304793,1304873-1304953,
           1305080-1305289,1305426-1305503,1305576-1305878
          Length = 328

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 86  YCIGAGSKRRKSSETRGCACRWKRVVG 6
           YC+     +RK+S   GC   W R+ G
Sbjct: 218 YCLKKKFSQRKASRACGCGTEWPRLEG 244


>11_01_0174 +
           1394229-1394346,1394695-1394891,1394972-1395052,
           1395184-1395393,1395531-1395608,1395682-1395990
          Length = 330

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 86  YCIGAGSKRRKSSETRGCACRWKRVVG 6
           YC+     +RK+S   GC   W R+ G
Sbjct: 218 YCLKKKFSQRKASRACGCGTEWPRLEG 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,390
Number of Sequences: 37544
Number of extensions: 284168
Number of successful extensions: 1014
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)