Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021721
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_16714| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_44117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7)                    28   7.4  

>SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +2

Query: 212 GLGGTRIHAILPLHRGHVAETGEDSRRGACGRAGQK 319
           GL G +     P H GH   TGE    GA G  GQK
Sbjct: 47  GLPGDKGPVGPPGHPGHKGPTGESGPTGALGAKGQK 82


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 246 PSTEAMSPRRERTLVEAHVVELGRRGSEGCETRGRTVRTPSV 371
           PSTEA+S     T +++H++   R G  GC+T  +  + PS+
Sbjct: 187 PSTEAVST----TTMQSHLITEARDGEIGCQTVSQRQQEPSL 224


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 203  SRLGLGGTRIHAILPLHRGHVAETGEDSRRGA 298
            S  G GG+  H ILP H   ++   +DS RGA
Sbjct: 1343 SSYGFGGSNAHTILPAHVLTLSARCKDSLRGA 1374


>SB_16714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 552 PQSAFIIFFGIVGDSTPHLXD*TESNTTSTRSPP 451
           P  AF+ +FG +G  TP L D   S T ++ + P
Sbjct: 833 PAVAFLRYFGFIGMGTPTLPDVVLSETHNSETQP 866


>SB_44117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 281 DSRRGACGRAGQKRQRRL*DKRPYGQDAQCRCQRLLGWSCSGCYRRR 421
           D ++    R G +R+ +   KR   +  Q   +R LGW CS  Y+++
Sbjct: 165 DDKKRMEARKGARREEQA-KKREGNETQQKGNKRCLGWKCSYYYKKK 210


>SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7)
          Length = 195

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -3

Query: 383 VADNDTGRPDRTASCLTAFAASSAQLYHMRLYESPLPSRRHGLGGGVISRGCE 225
           V D   G+        T    +SA+    R++    P R HG+    IS  CE
Sbjct: 126 VKDEGKGKSTNLQKSKTRIGNASAKKETERVHRPATPGREHGVQHNQISTSCE 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,802,949
Number of Sequences: 59808
Number of extensions: 297394
Number of successful extensions: 923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)