Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021721
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot...    29   2.0  
At5g25850.1 68418.m03067 F-box family protein contains F-box dom...    29   2.6  
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi...    27   7.9  
At1g67880.1 68414.m07751 glycosyl transferase family 17 protein ...    27   7.9  

>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
           similar to serine-type carboxypeptidase (SP:P55748)
           [Hordeum vulgare]
          Length = 479

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 422 FFFCSTHCNSIRVVADNDTGRPDRTASCLTAFAASSAQLYHMRLYESPLPSR 267
           F   S  CN I  +AD + G  D+  S  T    ++A   +M L + P+ SR
Sbjct: 259 FIHSSKQCNKILEIADKEIGNIDQ-YSVFTPACVANASQSNMLLKKRPMTSR 309


>At5g25850.1 68418.m03067 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 481

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 321 LFCPALPHAPLRESSPVSATWPRWRGNIAWMRVPPKPSLEL 199
           L C  L H P++E    S    RW+ NI W+ V   PSLEL
Sbjct: 29  LICQILSHLPIKEVVTTSVLSTRWK-NI-WLSV---PSLEL 64


>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
           protein / ELM2 domain-containing protein / Myb-like
           DNA-binding domain-containing protein similar to
           BRG1-binding protein ELD/OSA1 [Homo sapiens]
           GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
           DNA binding domain, PF01448: ELM2 domain, PF00249:
           Myb-like DNA-binding domain
          Length = 573

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 303 PHAPLRESSPVSATWPRWRGNIAWMRV 223
           PH P     P S+ W ++ GN  W++V
Sbjct: 236 PHDPAIGVIPHSSKWKQYNGNKCWLQV 262


>At1g67880.1 68414.m07751 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 390

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 389 GWSCSGCYRRRSELV 433
           GW CS C+RR SE V
Sbjct: 290 GWHCSFCFRRISEFV 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,356,061
Number of Sequences: 28952
Number of extensions: 190598
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)