Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021720
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    28   1.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   2.1  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   3.7  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   6.4  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   6.4  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   6.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.5  

>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 626 DRIGTIEELMKNFEYQGGREVFEVLL 703
           D +  IEEL+  +  QGGRE  E L+
Sbjct: 74  DYVACIEELLDIYPMQGGREYLETLV 99


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +2

Query: 518 NDGLPKASIECTQRFLLEGS---VKELATELLHTNVPEIDRIGTIEELMKNFEYQGGREV 688
           N  +   + E  ++  L G+    K+ AT +  T   E  ++  I  +++N EY GG  V
Sbjct: 700 NFSIQTTTAEILRKLCLHGTQEQAKQAATIIAITETKEF-KLDMITNIVENLEYNGGLPV 758

Query: 689 FEVLLGWL 712
             + LG L
Sbjct: 759 RLMTLGQL 766


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 295 QEQRSKEKDALRPVLILSSKKCFEAESFVQYQNINE 402
           +E+R K+K A    +I+S+ K    E+F++Y   N+
Sbjct: 382 EEERKKKKLAKYTEVIISNLKASNIEAFLEYLRSND 417


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 302 CSCVCRRHYRVLSMLTHCLSISDQNFIFMSQDSGLVVFKRN 180
           C   CR     LS  T   S +DQN + +  +     +K N
Sbjct: 49  CGLSCRHRMECLSRSTSQSSYADQNQVHLDSERSFFQYKLN 89


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = -2

Query: 417 SRCEEFV-DILILDKALRFETFLR*QYQDRPECVLFFGTLLLRLQ-KTL*GP 268
           S+ ++F+ ++ +LD A+  +  +R + +  PE  ++F T+LLR + K+L  P
Sbjct: 258 SQKKQFIRNLALLDMAVGKQRSVRKEKKRNPEESIYFSTILLREETKSLISP 309


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 536 ASIECTQRFLLEGSVKELATELLHTNVPE-IDRIGTIEELMKNFEYQGGREVFEVLL 703
           + +  +Q+  +EG +  L   + H NV + ID I   E+L    EY  G E+F+ +L
Sbjct: 45  SELTSSQQARIEGELVLLRL-IEHPNVLQLIDVISAQEQLFVVVEYMPGGELFDCML 100


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -3

Query: 266 SMLTHCLSISDQNFIFMSQDSGLVVFKRNGAKSAFIRTSSYQHCGSLSSGIPRS 105
           S  +H LS S  + +  S  SG+     + + S    +SSY      +SG+  S
Sbjct: 117 SSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLSSS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,143
Number of Sequences: 5004
Number of extensions: 60531
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)