Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021720
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1767 + 29338867-29338912,29339261-29339325,29339571-293396...    29   2.9  
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43...    29   2.9  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    28   8.9  

>07_03_1767 +
           29338867-29338912,29339261-29339325,29339571-29339642,
           29339913-29339956,29340047-29340158,29340879-29340950,
           29341449-29341511,29341957-29342034,29342110-29342202,
           29342294-29342413,29342762-29342845,29343094-29343309,
           29343401-29343448,29343761-29343871,29344170-29344267,
           29345004-29345248,29345764-29345832,29345919-29345983,
           29346168-29346337,29346434-29346512,29346614-29346869,
           29347416-29347461,29347602-29347710,29347820-29347882,
           29350075-29350107,29350924-29351442
          Length = 991

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 121 EDKLPQCWYDDVRMNA-LFAPFRLKTTNPESWDMKMK 228
           ED L  C+Y D  MNA   +P +L +  P  +D K++
Sbjct: 39  EDLLVTCYYIDCGMNAYAISPAQLYSNTPSDFDFKLE 75


>06_01_0047 -
           429838-429960,430413-430508,430589-430596,431088-431141,
           431226-431274,431368-431466,431560-431639,431926-431989,
           432082-432255,432342-432965,433046-433189,433262-433372,
           433442-433498,433664-433798
          Length = 605

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 428 PALGPVVKNSLIF*YWTKLSASKHFFDDNIKTGRSASFSLE 306
           P +  +  N L+     KLS SK   DDNIK  RS S  L+
Sbjct: 71  PHVNEISTNELLKTLKRKLSKSKRSEDDNIKMKRSESIELD 111


>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
            25826468-25827080,25827735-25827775,25830549-25831191,
            25832595-25834012,25834110-25834251,25834415-25834522,
            25835346-25835558,25835643-25835753,25836099-25836293,
            25836555-25836695,25836835-25836909
          Length = 1806

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 361  FEAESFVQYQNINEFFTTGPRAGYVG 438
            F+  S + Y  IN++ T GPR   VG
Sbjct: 1315 FQHPSLLSYAGINQYNTMGPRVSVVG 1340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,867,923
Number of Sequences: 37544
Number of extensions: 393646
Number of successful extensions: 933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)