Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021720
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40770| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.24 
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)               29   3.9  
SB_18469| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_51209| Best HMM Match : UBX (HMM E-Value=0.5)                       28   9.1  
SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_2793| Best HMM Match : UBX (HMM E-Value=0.32)                       28   9.1  

>SB_40770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 130 LPQCWYDDVRMNALFAPF-RLKTTNPESWDMKMKFWS 237
           +P  W DD RMN +F+ F   +  NP+ WD K+ FW+
Sbjct: 47  VPTDWEDDDRMNFMFSAFPENRNVNPKHWDSKLNFWT 83


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 190 KTTNPESWDMKMKFWSDMLRQCVSIERTL*CLLQTQEQRSKEKDALRP 333
           K+T P++W  ++K W + +RQ + +++        Q+  SK  D L P
Sbjct: 7   KSTRPQTWKCRLKGWQNSMRQSIRVKKR-----SPQKTNSKVSDRLSP 49


>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
          Length = 1084

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 127 KLPQCWYDDVRMNALFAPFRLKTTNPESWDMKMKFWSD 240
           K   C     R N L A  R  T NP  WD++M+  +D
Sbjct: 651 KCVYCGKTFARSNVLKAHVRCHTGNPNRWDVRMRACND 688


>SB_18469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 240 YAQAVCKHRKDPIVSSADARAAFQRKGRTPA 332
           Y + VC+H   P+VS A  RA     G TPA
Sbjct: 11  YCEWVCQHFLCPVVSQACERAMLADVGATPA 41


>SB_51209| Best HMM Match : UBX (HMM E-Value=0.5)
          Length = 272

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 539 SIECTQRFLLEGSVKELATELLHTNVPEIDRIGTIEELMKNFE 667
           +I  T   +L    +E  T+ L TN+ EID+   +EE++K ++
Sbjct: 228 AIALTHYNVLNKKRQEELTKYLKTNIVEIDKDHIVEEILKLYK 270


>SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 539 SIECTQRFLLEGSVKELATELLHTNVPEIDRIGTIEELMKNFE 667
           +I  T   +L    +E  T+ L TN+ EID+   +EE++K ++
Sbjct: 361 AIALTHYNVLNKKRQEELTKYLKTNIVEIDKDHIVEEILKLYK 403


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 518  CPELSCR*K*GDSCESKCSRFESKSSCPT 432
            CP + C  K   SC + CS    KSSCP+
Sbjct: 1565 CP-IKCCTKLSSSCPADCSPQNCKSSCPS 1592


>SB_2793| Best HMM Match : UBX (HMM E-Value=0.32)
          Length = 311

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 539 SIECTQRFLLEGSVKELATELLHTNVPEIDRIGTIEELMKNFE 667
           +I  T   +L    +E  T+ L TN+ EID+   +EE++K ++
Sbjct: 248 AIALTHYNVLNKKRQEELTKYLKTNIVEIDKDHIVEEILKLYK 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,996,613
Number of Sequences: 59808
Number of extensions: 463204
Number of successful extensions: 1450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)