Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021720
         (739 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC042050-1|AAH42050.1|  453|Homo sapiens CHMP family, member 7 p...    38   0.028
BC019110-1|AAH19110.1|  453|Homo sapiens CHMP family, member 7 p...    38   0.028
BC004344-1|AAH04344.1|  411|Homo sapiens CHMP7 protein protein.        34   0.46 

>BC042050-1|AAH42050.1|  453|Homo sapiens CHMP family, member 7
           protein.
          Length = 453

 Score = 38.3 bits (85), Expect = 0.028
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 103 PDRGIPEDKLPQCWYDDV-RMNALFAPF-RLKTTNPESWDMKMKFWSDML 246
           P  G P   LP  W +D  RM+ LF+ F R +  N   WD KM FW+ ++
Sbjct: 11  PAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV 60



 Score = 34.3 bits (75), Expect = 0.46
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 291 DARAAFQRKGRTPACLDIVIEEMFRSGELCPISKYQRILHNGTEGWVRW 437
           D + AFQRKG  P  L  V++++ R GEL   S +   + +    W+ W
Sbjct: 76  DLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDS---SWISW 121


>BC019110-1|AAH19110.1|  453|Homo sapiens CHMP family, member 7
           protein.
          Length = 453

 Score = 38.3 bits (85), Expect = 0.028
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 103 PDRGIPEDKLPQCWYDDV-RMNALFAPF-RLKTTNPESWDMKMKFWSDML 246
           P  G P   LP  W +D  RM+ LF+ F R +  N   WD KM FW+ ++
Sbjct: 11  PAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV 60



 Score = 34.3 bits (75), Expect = 0.46
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 291 DARAAFQRKGRTPACLDIVIEEMFRSGELCPISKYQRILHNGTEGWVRW 437
           D + AFQRKG  P  L  V++++ R GEL   S +   + +    W+ W
Sbjct: 76  DLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDS---SWISW 121


>BC004344-1|AAH04344.1|  411|Homo sapiens CHMP7 protein protein.
          Length = 411

 Score = 34.3 bits (75), Expect = 0.46
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 291 DARAAFQRKGRTPACLDIVIEEMFRSGELCPISKYQRILHNGTEGWVRW 437
           D + AFQRKG  P  L  V++++ R GEL   S +   + +    W+ W
Sbjct: 34  DLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDS---SWISW 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,526,054
Number of Sequences: 237096
Number of extensions: 2174803
Number of successful extensions: 4050
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4050
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)