Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021720
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-2|CAA92759.1|  411|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z75531-5|CAA99800.1|  384|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z68338-2|CAA92759.1|  411|Caenorhabditis elegans Hypothetical
           protein T24B8.2 protein.
          Length = 411

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +1

Query: 130 LPQCWYDDVRMNALFAPFRLKTTNPESWDMKMKFWSDML-RQCVSIERTL*CLLQTQEQ 303
           LP  W DD++MN L +  + +  N   +D K++FW+D +   C+  +     LL+ +++
Sbjct: 5   LPSEWQDDLKMNGLMSVMKERHVNKVDYDRKLRFWTDAIYGSCIGEKNATFNLLELKKR 63



 Score = 35.5 bits (78), Expect = 0.040
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = +3

Query: 255 CKHRKDPIVSSADARAAFQRKGRTPACLDIVIEEMFRSGELCPISKYQRILHNGTEGW 428
           C   K+   +  + +  F+R  R PA LD++++ + + G++  I ++ R  H+   GW
Sbjct: 47  CIGEKNATFNLLELKKRFRRNDRVPASLDVILDHLKKKGDVITIGEW-RDRHSSWVGW 103


>Z75531-5|CAA99800.1|  384|Caenorhabditis elegans Hypothetical
           protein C54D10.5 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 181 FRLKTTNPESWDMKMKFWSDMLRQCVSIERTL 276
           FR KTTNP  W ++ + +     Q ++I +TL
Sbjct: 191 FRTKTTNPREWALESQLYHFFDFQVMTIAQTL 222


>U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical protein
            K04C2.2 protein.
          Length = 990

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/81 (25%), Positives = 38/81 (46%)
 Frame = +1

Query: 157  RMNALFAPFRLKTTNPESWDMKMKFWSDMLRQCVSIERTL*CLLQTQEQRSKEKDALRPV 336
            ++  L A +  K  + +  ++K + +  +L+  + +       +Q  E   K  DALR  
Sbjct: 891  KIGKLAAAYFQKVVDSDKSELKPRLFGTVLQLILKVT----VCIQNDE---KHVDALRES 943

Query: 337  LILSSKKCFEAESFVQYQNIN 399
            L    +K FE E F+Q + IN
Sbjct: 944  LEYVIQKMFEGEVFIQLKKIN 964


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,376,185
Number of Sequences: 27780
Number of extensions: 346754
Number of successful extensions: 893
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)