Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021720
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG sulfoquinovosylt...    28   7.4  
At3g52290.1 68416.m05747 calmodulin-binding family protein simil...    28   7.4  
At3g01160.1 68416.m00020 expressed protein                             28   7.4  
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT...    27   9.8  
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con...    27   9.8  

>At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG
           sulfoquinovosyltransferase / sulfolipid synthase (SQD2)
           identical to GI:20302857
          Length = 510

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -2

Query: 654 INSSIVPIRSISGTFV*SSSVASSLTDPSSRNLCVHSILALG 529
           IN SI P    S T   SSS A+S + P S +  +HS L+ G
Sbjct: 7   INLSIPPHLLPSTTNTCSSSSATSCSPPRSSSFVLHSPLSFG 48


>At3g52290.1 68416.m05747 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 430

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +3

Query: 81  SLSHDGSTRPRNTRGQAPAVLVRRCPNERTLRPVSFKNHQP 203
           +LS  G T P + RG +P V  R+ P+E +   VSF++ QP
Sbjct: 303 NLSPRGKT-PNSRRGSSPRV--RQVPSEDSNSIVSFQSEQP 340


>At3g01160.1 68416.m00020 expressed protein
          Length = 380

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 115 IPEDKLPQCWYDDVRMNALFAP--FRLKTTNPE 207
           I EDK+P    DD R +ALF+   + L  T+P+
Sbjct: 255 ISEDKIPAAELDDPRFSALFSSPYYALDPTDPQ 287


>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
           identical to homeobox protein knotted-1 like 3 (KNAT3)
           SP:P48000 from [Arabidopsis thaliana]
          Length = 431

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 307 NAALASAEDTIGSFLCLHTA*AYQTRTSSS 218
           N AL  + D   +FL LHTA A  T  SSS
Sbjct: 49  NTALLRSSDNNNNFLNLHTATANTTTASSS 78


>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
           contains similarity to SKP1 interacting partner 2
           GI:10716949 from [Arabidopsis thaliana]; contains Pfam
           PF00646: F-box domain
          Length = 554

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 311 LERCSCVCRRHYRVLSMLTHCLSISDQN 228
           L+RCS VCRR   +     H LS+  Q+
Sbjct: 94  LKRCSLVCRRWLTIEGQCRHRLSLKAQS 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,383,346
Number of Sequences: 28952
Number of extensions: 320913
Number of successful extensions: 786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)