Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021718
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   7.8  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 373  CSRRPRTTQSSASS*IQDGAVSHFPFGWLLS 465
            C++ P + +S+ +  +++   +  P GWLLS
Sbjct: 1954 CNKGPASDKSAFADFVKELHEAFKPKGWLLS 1984



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 68   LEESNSTSADDEWEHRRCNWTNRC 139
            +EE N    D +WE+ +C W   C
Sbjct: 2430 IEEWNFDGLDLDWEYPKC-WQVDC 2452


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 546 IALIGRIYGVVYERRIAIATLAAFSIDASLSTCDVATSTGHSF 674
           I ++GRI G+    +  ++  A    +  L  CD  TS   SF
Sbjct: 211 IGILGRIKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSF 253


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 546 IALIGRIYGVVYERRIAIATLAAFSIDASLSTCDVATSTGHSF 674
           I ++GRI G+    +  ++  A    +  L  CD  TS   SF
Sbjct: 211 IGILGRIKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSF 253


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 370 LAFIPIFTNPRFFKRSAELGLVA 302
           L  +P+  +P F + S E+GL +
Sbjct: 363 LGHMPLLADPSFAQFSQEIGLAS 385


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 386 RELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEAD 511
           R L   + H ++ T    T  +    P   RC  + N EE+D
Sbjct: 271 RHLIQRRTHTRHTTTSHNTRGTPRTTPASSRCGQLFNTEESD 312


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,064
Number of Sequences: 336
Number of extensions: 3180
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)