Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021718
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 97 3e-21
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 34 0.018
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 34 0.024
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 31 0.13
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.69
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 29 0.91
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 28 1.2
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 28 1.6
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 27 2.1
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 27 3.7
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 27 3.7
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 4.8
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 26 6.4
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 96.7 bits (230), Expect = 3e-21
Identities = 38/68 (55%), Positives = 50/68 (73%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCH 484
YKTE C+ ++ +G C+YG KCQFAHG +EL+ RHPKYK+E CR+F G+CPYG RC
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCC 386
Query: 485 FVHNAEEA 508
F+H+ A
Sbjct: 387 FLHDESNA 394
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 34.3 bits (75), Expect = 0.018
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPRCHFVHNAEEADA 514
Y+ ++C+ + G+C YG C F+H E+ A
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLHMREDYKA 216
Score = 33.9 bits (74), Expect = 0.024
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAH 379
Y+ ++C+ ++ G C YGD C+F H
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLH 209
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 33.9 bits (74), Expect = 0.024
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 493
C + E G C G++C + H P + +C ++++GFCP GP C H
Sbjct: 82 CHFYAERGWCSNGEECLYLH---------LDPSKQVGVC-AWYNMGFCPLGPICRGKH 129
Score = 31.9 bits (69), Expect = 0.098
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 341 GVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 493
G+CK G++C F H NL++ P C + G+C G C ++H
Sbjct: 60 GLCKKGEQCDFLHEY----NLKKMPP-----CHFYAERGWCSNGEECLYLH 101
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFV 490
LC C Y + C+F H V E + P + C F G CP G +C ++
Sbjct: 47 LCPAISIGNECPYKENCKFPHDV-EAYLATKAPDI-GDKCPIFERYGVCPAGFKCRWL 102
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +2
Query: 410 HPKYKTELCRTFHSVGFCPYGPRCHFVHNAE 502
H K LC CPY C F H+ E
Sbjct: 40 HVKENNALCPAISIGNECPYKENCKFPHDVE 70
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.69
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 493
C+ F G C G+ C F+H + R +C+ F G C +GP+C H
Sbjct: 47 CKFFRN-GTCTAGENCPFSHSLETER----------PICKYFLK-GNCKFGPKCALSH 92
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVRELRNL 403
+C+ F + G CK+G KC +H + NL
Sbjct: 73 ICKYFLK-GNCKFGPKCALSHALPGNTNL 100
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 172 CSQLRPLETELAPIGPIAPPMFPFIVCTGRV 80
C +LRP + P+ P+ P+ IVC G V
Sbjct: 138 CRELRPETRPVDPVSPVVSPVDGRIVCQGVV 168
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = -1
Query: 569 IDPPDESDANEPPGDDGSLRLLPL----RYARNGNAVHKD 462
+D +E+D N PP D+G + LL YAR A+ +D
Sbjct: 14 VDTEEENDKNPPPLDEGDIELLKSYATGPYARELAAIKED 53
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 500 EEADAENHRRQEVHW 544
++ADAENHRR VHW
Sbjct: 283 DDADAENHRR-NVHW 296
>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 546 IALIGRIYGVVYERRIAIATLAAFSIDASLSTCDV 650
I + GR++ + + T+A FS D+S CDV
Sbjct: 33 IQITGRLFHRIVNGKQDFTTVALFSADSSTMNCDV 67
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 357 GINANLLTASANYAIFSVILNTRRSCVALSIRLAS 461
G N N + AS+N A+ + + R CV + ++L +
Sbjct: 357 GFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGA 391
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 434 CRTFHSVGFCPYGPRCHFVH 493
CR +++ G C G C FVH
Sbjct: 209 CRYYNANGICGKGAACRFVH 228
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQ 406
+C+ F++ G CK+G KC H + + R ++
Sbjct: 69 ICKYFQK-GNCKFGSKCALEHVLPDGRKVK 97
>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 341 PLLQTVGRARSCSDLWLVAEEPVH 270
PL +T+G A S + +WL+ EE ++
Sbjct: 103 PLFKTMGTADSQNRMWLLPEETLY 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,715
Number of Sequences: 5004
Number of extensions: 50218
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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