Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021718
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27) 146 1e-35
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07) 38 0.008
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 36 0.026
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31) 35 0.079
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10) 32 0.55
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 31 1.3
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066) 30 2.2
SB_21056| Best HMM Match : zf-CCCH (HMM E-Value=0.0047) 30 2.2
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35) 30 2.2
SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018) 29 3.9
SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 6.8
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_51726| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14) 28 9.0
SB_38362| Best HMM Match : BRCT (HMM E-Value=0) 28 9.0
SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
Length = 527
Score = 146 bits (355), Expect = 1e-35
Identities = 58/70 (82%), Positives = 63/70 (90%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCH 484
YKTELCRPFEE+G CKYGDKCQFAHG ELR L RHPKYKTELCRTFH++GFCPYGPRCH
Sbjct: 155 YKTELCRPFEESGTCKYGDKCQFAHGYHELRQLARHPKYKTELCRTFHTIGFCPYGPRCH 214
Query: 485 FVHNAEEADA 514
F+HNA+E A
Sbjct: 215 FIHNADEKRA 224
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2
Query: 395 RNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 505
R Q +YKTELCR F G C YG +C F H E
Sbjct: 147 RGSQNSSRYKTELCRPFEESGTCKYGDKCQFAHGYHE 183
>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
Length = 505
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP 415
K LCR F G C YGD+CQF H ++ N Q P
Sbjct: 14 KPTLCRYFSANGYCFYGDQCQFVH-AKQTSNDQARP 48
Score = 34.7 bits (76), Expect = 0.079
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 422 KTELCRTFHSVGFCPYGPRCHFVH 493
K LCR F + G+C YG +C FVH
Sbjct: 14 KPTLCRYFSANGYCFYGDQCQFVH 37
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 36.3 bits (80), Expect = 0.026
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAH 379
Y+ ++C+ ++E G C +GD C+F H
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFLH 203
Score = 34.3 bits (75), Expect = 0.10
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPRCHFVHNAEEADAENHRRQEVHW 544
Y+ ++C+ + GFC +G C F+H + +D ++ + E W
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFLH--DRSDYKHGWQLEREW 218
>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
Length = 650
Score = 34.7 bits (76), Expect = 0.079
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = +2
Query: 311 TELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFV 490
++LC C GD C + H ++ + P E C F G CPYG C +
Sbjct: 64 SKLCSFAARGEECTRGDSCFYGHDPQKFLET-KEPDIGKE-CVNFLKSGKCPYGISCRYW 121
Query: 491 HNAEEADAENHRRQEVHWH 547
+ AD ++ +E H
Sbjct: 122 KHHTTADLKSIINEEFFSH 140
>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
Length = 508
Score = 31.9 bits (69), Expect = 0.55
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAH 379
+ ++CR + + G C++G+KC+F H
Sbjct: 39 RQKVCRFYAKKGNCRFGEKCRFVH 62
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 422 KTELCRTFHSVGFCPYGPRCHFVH 493
+ ++CR + G C +G +C FVH
Sbjct: 39 RQKVCRFYAKKGNCRFGEKCRFVH 62
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHG 382
CR +EE G C G+ C F HG
Sbjct: 255 CRDYEEKGFCIRGELCPFDHG 275
>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQ 406
+C+ F + G CK+GD C+ H +E NL+
Sbjct: 187 VCQHFVD-GKCKFGDTCKRVHHFKEQHNLE 215
>SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066)
Length = 731
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 344 VCKYGDKCQFAHGVREL 394
VC++G+ C FAHG EL
Sbjct: 650 VCRFGNTCSFAHGQEEL 666
>SB_21056| Best HMM Match : zf-CCCH (HMM E-Value=0.0047)
Length = 294
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 344 VCKYGDKCQFAHGVREL 394
VC++G+ C FAHG EL
Sbjct: 50 VCRFGNTCSFAHGQEEL 66
>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
Length = 724
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 228 LLDRLGHRRSNAPPVNRLLRHQPQVATRP--SSADRLKKRGFVNMGIN 365
LL+ L S PP RLL H P+++ RP S+ L+K G +N N
Sbjct: 442 LLELLTAFPSCFPPFERLLEHLPRLSPRPYSISSSPLEKPGQLNFVFN 489
>SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 487
+ +CR ++ GVC G KC+F H LQ P +CR + + G C C +
Sbjct: 34 ENNICRDYQR-GVCNRGGKCKFRHPEGMGIELQSPPM----ICRDYQN-GKCNRS-TCKY 86
Query: 488 VH 493
+H
Sbjct: 87 MH 88
>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAH 379
K +C F++ G C++G+KC+F H
Sbjct: 107 KKRVCWKFQK-GKCRFGEKCKFVH 129
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 416 KYKTELCRTFHSVGFCPYGPRCHFVHN 496
K K +C F G C +G +C FVHN
Sbjct: 105 KGKKRVCWKFQK-GKCRFGEKCKFVHN 130
>SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018)
Length = 541
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 410 HPKYKTELCRTFHSVGFCPYGPRCHFVH 493
HP + CRTF + CPYG C FVH
Sbjct: 444 HPTFP---CRTFPN---CPYGKSCMFVH 465
>SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 320 CRPFEEA-GVCKYGDKCQFAHGVRELRNLQRHPK-YKTELC-RTFHSVGFC 463
C ++E G+C GD C + H V + H + YKT C S G+C
Sbjct: 91 CTQYDETTGICPSGDDCPYLHRVAGDVERRYHLRYYKTATCVYETDSRGYC 141
>SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 392
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 510 TQRTIVARRFIGIALIGRIYGVVYERRIAIATLAAFSIDASL 635
T I R+I + R+YG ++AI+ + AFS A L
Sbjct: 88 TLTAIALNRYIAVMKAMRVYGAKKRAKLAISLIWAFSFSAVL 129
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 113 RRCNWTNRC*LSLKWSKLGAASSAVARFLCTSASCL 220
R+C +TNRC L+ + A + F C S C+
Sbjct: 337 RKCGYTNRCTLNTTQEERDAPCKISSWFKCRSGVCI 372
>SB_51726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 560 PDESDANEPPGDDGSLRLLPLRYARNGNAVHKDRSQPN 447
PDES A EPPG + L YA + V KD +P+
Sbjct: 77 PDESPAIEPPGVENPL------YAEISSGVPKDEEKPD 108
>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
Length = 1087
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKC 367
KT++ R F VC YGDKC
Sbjct: 541 KTKMWRQFTVQVVCTYGDKC 560
>SB_38362| Best HMM Match : BRCT (HMM E-Value=0)
Length = 1572
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = -1
Query: 473 VHKDRSQPNGK-CDTAPS---CI*DD--AEDCVVRGRREQIGIYPHIYKPPLLQTV 324
+H+ R+ N K C TA S I C G R + G+YPH Y P + +V
Sbjct: 944 IHQGRANDNSKECTTARSHGMFIVSPYWLHTCAEEGVRVEEGLYPHTYNPKMSLSV 999
>SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/60 (30%), Positives = 22/60 (36%)
Frame = -1
Query: 575 DAIDPPDESDANEPPGDDGSLRLLPLRYARNGNAVHKDRSQPNGKCDTAPSCI*DDAEDC 396
D D D+ D DD A NG+ K R P G+C T C+ DC
Sbjct: 229 DDDDDDDDDDGGNDDDDDDDENDAE-NDADNGDKGRKARHSPGGRCVTRQECV--TGRDC 285
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,673,617
Number of Sequences: 59808
Number of extensions: 432286
Number of successful extensions: 3601
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3597
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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