Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021718
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein ... 98 5e-21
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 97 1e-20
At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ... 44 6e-09
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 50 2e-06
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 50 2e-06
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 46 2e-05
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ... 45 5e-05
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ... 44 8e-05
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 42 3e-04
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ... 42 3e-04
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 42 4e-04
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 41 0.001
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 41 0.001
At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ... 40 0.002
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 38 0.005
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ... 38 0.007
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 38 0.007
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 38 0.007
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 38 0.007
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 38 0.007
At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein ... 37 0.012
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 37 0.016
At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ... 36 0.021
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ... 36 0.021
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ... 36 0.037
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 36 0.037
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ... 36 0.037
At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein ... 36 0.037
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ... 36 0.037
At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ... 35 0.049
At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger ... 35 0.049
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 35 0.049
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ... 35 0.049
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica... 35 0.064
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 34 0.085
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 33 0.15
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 33 0.15
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.20
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 33 0.20
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 33 0.20
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 33 0.26
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 32 0.34
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 32 0.34
At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ... 31 0.60
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ... 31 0.60
At2g46250.1 68415.m05751 myosin heavy chain-related contains wea... 31 1.0
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 29 2.4
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 29 3.2
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 29 3.2
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 29 3.2
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 29 3.2
At5g57790.1 68418.m08529 expressed protein 29 4.2
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 29 4.2
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 28 5.6
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 28 5.6
At5g58730.1 68418.m07357 pfkB-type carbohydrate kinase family pr... 28 7.4
At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein ... 28 7.4
At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing ... 27 9.8
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.8
>At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 308
Score = 98.3 bits (234), Expect = 5e-21
Identities = 39/68 (57%), Positives = 49/68 (72%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 487
KTELC ++E G C YGD CQFAHG++ELR + RHP+YKTE+CR + CPYG RCHF
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHF 283
Query: 488 VHNAEEAD 511
H+ E +
Sbjct: 284 RHSLSEQE 291
Score = 35.1 bits (77), Expect = 0.049
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNL 403
YKTE+CR C YG +C F H + E L
Sbjct: 261 YKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKL 293
>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 310
Score = 96.7 bits (230), Expect = 1e-20
Identities = 38/68 (55%), Positives = 48/68 (70%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 487
KTELC ++E G C YGD CQFAHG+ ELR + RHP+YKTE+CR + CPYG RCHF
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHF 293
Query: 488 VHNAEEAD 511
H+ + +
Sbjct: 294 RHSLTDQE 301
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 380 GVRELRNLQ--RHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 505
G RE L+ R KTELC + G C YG C F H +E
Sbjct: 218 GEREALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDE 261
Score = 35.9 bits (79), Expect = 0.028
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRE 391
YKTE+CR +C YG +C F H + +
Sbjct: 271 YKTEVCRMMVTGAMCPYGHRCHFRHSLTD 299
>At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 252
Score = 44.4 bits (100), Expect(2) = 6e-09
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 407 RHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 505
+ P +KT +C + + G+CP+G CHF H E
Sbjct: 140 KSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSE 172
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVREL 394
+KT +C ++ G C +G C FAHG EL
Sbjct: 144 WKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPR-CHFVHNAEE 505
+KT+LC F + G CPY CHF H+AEE
Sbjct: 72 FKTKLCFKFRA-GTCPYSASSCHFAHSAEE 100
Score = 33.5 bits (73), Expect(2) = 6e-09
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYG-DKCQFAHGVRELR 397
+KT+LC F AG C Y C FAH ELR
Sbjct: 72 FKTKLCFKFR-AGTCPYSASSCHFAHSAEELR 102
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAH-GVR------ELRNLQRHPKYKTE-LCRTFHSVGFCPYGP 475
CR F G CKYGD C+++H GVR L N P + C F S GFC +GP
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGP 326
Query: 476 RCHFVH 493
C F H
Sbjct: 327 NCKFDH 332
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL-----CRTFHSVGFCPYGPRCH 484
C+ + G+C YG C++ H +++ + + E C F G C YGP C
Sbjct: 53 CQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCK 112
Query: 485 FVHNAEEADAE 517
+ H + A+
Sbjct: 113 YHHPKDRNGAQ 123
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAH-----GVRELR-NLQRHP-KYKTELCRTFHSVGFCPYGPR 478
C F + G CKYG C++ H G + + N+ P + + C + G C +G
Sbjct: 96 CEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVA 155
Query: 479 CHFVH 493
C F H
Sbjct: 156 CKFHH 160
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAH-GVR------ELRNLQRHPKYKTE-LCRTFHSVGFCPYGP 475
CR F G CKYGD C+++H GVR L N P + C F S GFC +GP
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGP 326
Query: 476 RCHFVH 493
C F H
Sbjct: 327 NCKFDH 332
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL-----CRTFHSVGFCPYGPRCH 484
C+ + G+C YG C++ H +++ + + E C F G C YGP C
Sbjct: 53 CQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCK 112
Query: 485 FVHNAEEADAE 517
+ H + A+
Sbjct: 113 YHHPKDRNGAQ 123
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAH-----GVRELR-NLQRHP-KYKTELCRTFHSVGFCPYGPR 478
C F + G CKYG C++ H G + + N+ P + + C + G C +G
Sbjct: 96 CEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVA 155
Query: 479 CHFVH 493
C F H
Sbjct: 156 CKFHH 160
>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 386
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRN 400
+KT LC F+ G C +GDKC FAHG EL N
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAHGQAELHN 301
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 397
YKT +C F AG C+ G+ C FAHG+ +LR
Sbjct: 105 YKTRMCAKFR-AGTCRNGELCNFAHGIEDLR 134
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPRCHFVHNAEE 505
+KT LC F G CP+G +CHF H E
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAHGQAE 298
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 422 KTELCRTFHSVGFCPYGPRCHFVH 493
+ +LCR F CPYG RC+F+H
Sbjct: 185 RMKLCRKFCFGEECPYGDRCNFIH 208
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPRCHFVHNAEEADAENHRRQEV 538
YKT +C F + G C G C+F H E+ QE+
Sbjct: 105 YKTRMCAKFRA-GTCRNGELCNFAHGIEDLRQPPSNWQEI 143
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAH 379
+ +LCR F C YGD+C F H
Sbjct: 185 RMKLCRKFCFGEECPYGDRCNFIH 208
>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 453
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL----------CRTFHSVGFCPY 469
CR F G CKYGD C+++H L LQ P + C F + GFC +
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKERL--LQSPPTLLNPIVLPARPGQPACGNFKAYGFCKF 324
Query: 470 GPRCHFVHN 496
G C F H+
Sbjct: 325 GANCKFDHS 333
Score = 34.3 bits (75), Expect = 0.085
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRN--LQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 493
C+ F G C YG+ C++ H + L + + + + G C YGP C + H
Sbjct: 50 CQFFLRTGQCGYGNSCRYNHPLTNLPQGIIYYRDQLPERVGQPDCETGACKYGPTCKYHH 109
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Frame = +2
Query: 323 RPFEEAGVCKYGDKCQFAHGVRE------LRNLQRHPKYKTEL-CRTFHSVGFCPYGPRC 481
+P E G CKYG C++ H L N+ P + E C + G C +G C
Sbjct: 91 QPDCETGACKYGPTCKYHHPKDRNGAGPVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVAC 150
Query: 482 HFVHNAEEADAEN 520
F H + N
Sbjct: 151 KFHHPHPHSQPSN 163
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPY 469
C + + G+C++G C+F H + H Y +F SVGF PY
Sbjct: 135 CPYYMQTGLCRFGVACKFHHPHPHSQPSNGHSAYAMS---SFPSVGF-PY 180
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 434 CRTFHSVGFCPYGPRCHFVHNAE 502
CR F + G C YG C + H E
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKE 289
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGV 385
C F+ G CK+G C+F H +
Sbjct: 313 CGNFKAYGFCKFGANCKFDHSM 334
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 393
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 439
Y E+C F G C GD C+FAHGV E HP +Y+TE C+
Sbjct: 123 YSGEVCPEFRRGGDCSRGDDCEFAHGVFE---CWLHPIRYRTEACK 165
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 365 CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 505
C FAH G + R R +Y E+C F G C G C F H E
Sbjct: 104 CPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFE 151
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 439
Y E+C F G C GD+C FAHGV E HP +Y+TE C+
Sbjct: 101 YTGEVCPEFSRHGDCSRGDECGFAHGVFE---CWLHPSRYRTEACK 143
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +2
Query: 365 CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 505
C F+H G + R R Y E+C F G C G C F H E
Sbjct: 82 CPFSHPGEKARRRDPRRFHYTGEVCPEFSRHGDCSRGDECGFAHGVFE 129
>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 384
Score = 42.3 bits (95), Expect = 3e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPRCHFVHNAEE 505
+KT +C + G+CP+G +CHF H A E
Sbjct: 261 WKTRICNKWEITGYCPFGAKCHFAHGAAE 289
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVREL 394
+KT +C +E G C +G KC FAHG EL
Sbjct: 261 WKTRICNKWEITGYCPFGAKCHFAHGAAEL 290
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 397
+KT+LC F AG C Y C FAH V ELR
Sbjct: 92 FKTKLCCKFR-AGTCPYITNCNFAHTVEELR 121
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPRCHFVHNAEEADAENHRRQEV 538
+KT+LC F + G CPY C+F H EE QE+
Sbjct: 92 FKTKLCCKFRA-GTCPYITNCNFAHTVEELRRPPPNWQEI 130
Score = 31.5 bits (68), Expect = 0.60
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPRCHFVHNAEEADAEN 520
+K C+ F++ CPYG C F+H+ + E+
Sbjct: 173 FKGRHCKKFYTEEGCPYGESCTFLHDEASRNRES 206
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 397
YKT++C + + G C YGD+C FAHG ELR
Sbjct: 206 YKTKICDRYSK-GNCTYGDRCHFAHGESELR 235
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 410 HP--KYKTELCRTFHSVGFCPYGPRCHFVHNAEE 505
HP YKT++C + S G C YG RCHF H E
Sbjct: 201 HPGSNYKTKICDRY-SKGNCTYGDRCHFAHGESE 233
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 371 FAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 493
F +E+ ++ K++ C F S CP+G CHF+H
Sbjct: 21 FKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLH 61
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Frame = +2
Query: 311 TELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRH---------PKYKTELCRTFHSVGFC 463
+E C + G CKYG C+F H VR + R K C+ + G C
Sbjct: 104 SEDCSFYMRTGSCKYGSSCKFNHPVRRKLQIGRERVRERDEDVENPKLMECKYYFRTGGC 163
Query: 464 PYGPRCHFVHNAE 502
YG C F H E
Sbjct: 164 KYGESCRFSHMKE 176
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELR-------NLQRHP-KYKTELCRTFHSVGFCPYGP 475
C + + G CK+ KC++ H L N + P + +C + G C +GP
Sbjct: 340 CTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGP 399
Query: 476 RCHFVHN 496
C F H+
Sbjct: 400 ACRFDHS 406
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGV 385
+C + G+CK+G C+F H +
Sbjct: 385 MCTHYSRYGICKFGPACRFDHSI 407
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 397
+KT++C F + G C +GD+C FAHG ELR
Sbjct: 214 FKTKICERFSK-GNCTFGDRCHFAHGEAELR 243
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 410 HP--KYKTELCRTFHSVGFCPYGPRCHFVHNAEE 505
HP +KT++C F S G C +G RCHF H E
Sbjct: 209 HPGSNFKTKICERF-SKGNCTFGDRCHFAHGEAE 241
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 422 KTELCRTFHSVGFCPYGPRCHFVH 493
K++ C F S CP+G CHF+H
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLH 61
>At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 356
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 481
Y C F + G CK GD C+FAHGV E HP +Y+T+ C+ G C C
Sbjct: 120 YSGTACPDFRKGG-CKKGDSCEFAHGVFE---CWLHPARYRTQPCK---DGGNC-LRKIC 171
Query: 482 HFVHNAEE 505
F H+ ++
Sbjct: 172 FFAHSPDQ 179
>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 809
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 397
+KT LC F C +G++C++AHG ELR
Sbjct: 80 WKTSLCSYFRREASCSHGNECKYAHGEAELR 110
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 413 PKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 505
P +KT LC F C +G C + H E
Sbjct: 78 PWWKTSLCSYFRREASCSHGNECKYAHGEAE 108
>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 706
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHFVHN 496
C F++ G CK GD C++AHGV E HP +Y+T LC+ G C F H
Sbjct: 303 CPDFKK-GSCKQGDMCEYAHGVFE---CWLHPAQYRTRLCKD----GMGCNRRVCFFAHA 354
Query: 497 AEE 505
EE
Sbjct: 355 NEE 357
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 37.9 bits (84), Expect = 0.007
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAH 379
Y+ ++C+ ++E G C YGD C+F H
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLH 260
Score = 34.3 bits (75), Expect = 0.085
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPRCHFVHNAEEADAENHRRQEVHWHRSHR 559
Y+ ++C+ + G+C YG C F+H + D + + E W + +
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLH--DRGDYKPGWQIEKEWEEAEK 280
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 37.9 bits (84), Expect = 0.007
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAH 379
Y+ ++C+ ++E G C YGD C+F H
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLH 260
Score = 34.3 bits (75), Expect = 0.085
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPRCHFVHNAEEADAENHRRQEVHWHRSHR 559
Y+ ++C+ + G+C YG C F+H + D + + E W + +
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLH--DRGDYKPGWQIEKEWEEAEK 280
>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 716
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 481
Y C F + G C+ GD C++AHGV E HP +Y+T LC+ G C C
Sbjct: 302 YSCVPCPDFRK-GACRRGDMCEYAHGVFE---CWLHPAQYRTRLCK--DGTG-CARRV-C 353
Query: 482 HFVHNAEE 505
F H EE
Sbjct: 354 FFAHTPEE 361
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 37.9 bits (84), Expect = 0.007
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAH 379
Y+ ++C+ ++E G C YGD C+F H
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLH 225
Score = 34.3 bits (75), Expect = 0.085
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPRCHFVHNAEEADAENHRRQEVHWHRSHR 559
Y+ ++C+ + G+C YG C F+H + D + + E W + +
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLH--DRGDYKPGWQIEKEWEEAEK 245
>At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 359
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 481
Y C F + G CK GD C+F+HGV E HP +Y+T+ C+ G C C
Sbjct: 119 YSGTACPEFRK-GCCKRGDACEFSHGVFE---CWLHPARYRTQPCK---DGGNCRRRV-C 170
Query: 482 HFVHNAEE 505
F H+ ++
Sbjct: 171 FFAHSPDQ 178
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 36.7 bits (81), Expect = 0.016
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHFVHN 496
C F + G C GD C++AHGV E HP +YKT LC+ G C C F H
Sbjct: 257 CPEFRK-GSCPKGDSCEYAHGVFE---SWLHPAQYKTRLCK--DETG-CA-RKVCFFAHK 308
Query: 497 AEE 505
EE
Sbjct: 309 REE 311
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +2
Query: 362 KCQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEA 508
+C F H G R R Y C F G CP G C + H E+
Sbjct: 232 ECAFVHPGENARRRDPRKYPYTCVPCPEFRK-GSCPKGDSCEYAHGVFES 280
>At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 397
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAH-----GV--RELRNLQRHPKYKTEL-CRTFHSVGFCPYGP 475
C + + G CK+G C+F H G+ R N+ +P E+ C F G C +G
Sbjct: 91 CEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGG 150
Query: 476 RCHFVH 493
C F H
Sbjct: 151 TCKFNH 156
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAH-GVREL--RNLQRHPKYKTEL----CRTFHSVGFCPYGPR 478
C + G+C++G C+F H REL + +Y + C + G C +G
Sbjct: 46 CSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRGEYPERIGQPECEYYLKTGTCKFGVT 105
Query: 479 CHFVHNAEEA 508
C F H +A
Sbjct: 106 CKFHHPRNKA 115
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRE--------LRNLQRHPKYKTELCRTFHSVGFCPYGP 475
C+ + + G CK+G C+F H L ++ + LC + G C +GP
Sbjct: 280 CQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGP 339
Query: 476 RCHFVH 493
C F H
Sbjct: 340 SCKFDH 345
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVR 388
LC + G+CK+G C+F H +R
Sbjct: 325 LCVFYTRYGICKFGPSCKFDHPMR 348
>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 315
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 481
Y C F + G C+ GD C+F+HGV E HP +Y+T+ C+ G C
Sbjct: 131 YSGTACPEFRK-GSCRRGDSCEFSHGVFE---CWLHPSRYRTQPCKD----GTSCRRRIC 182
Query: 482 HFVHNAEE 505
F H E+
Sbjct: 183 FFAHTTEQ 190
>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 607
Score = 35.5 bits (78), Expect = 0.037
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 481
Y C F + G C GD C++AHG+ E HP +Y+T LC+ + C C
Sbjct: 250 YSCVPCPEFRK-GSCSRGDTCEYAHGIFE---CWLHPAQYRTRLCKDETN---CSRRV-C 301
Query: 482 HFVHNAEE 505
F H EE
Sbjct: 302 FFAHKPEE 309
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVR-------ELRNLQRHPKYKTELCRTFHSVGFCPYGPR 478
C+ F G CK+G C+F H + L ++ + C F G C +GP
Sbjct: 297 CQYFMRTGDCKFGTSCRFHHPMEAASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPA 356
Query: 479 CHFVHN 496
C F H+
Sbjct: 357 CKFDHS 362
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRE---LRNLQRH-----PKYKTELCRTFHSVGFCPYGP 475
C + GVC YG +C+F H L L+ + +C+ F G C +G
Sbjct: 48 CIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGA 107
Query: 476 RCHFVH 493
C + H
Sbjct: 108 SCKYHH 113
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGV 385
C F + G+CK+G C+F H +
Sbjct: 342 CTHFAQHGICKFGPACKFDHSL 363
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAH--------GVRELR-NLQRHPKYKTEL-CRTFHSVGFCP 466
+C+ F G CK+G C++ H V + N P E C F G C
Sbjct: 93 VCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCK 152
Query: 467 YGPRCHFVH 493
+G C + H
Sbjct: 153 FGSTCRYHH 161
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 434 CRTFHSVGFCPYGPRCHFVHNAEEADAE 517
C+ F G C +G C F H E A E
Sbjct: 297 CQYFMRTGDCKFGTSCRFHHPMEAASPE 324
>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 368
Score = 35.5 bits (78), Expect = 0.037
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-----KYKTELCRTFHSVGFCPYGPRCH 484
C+ + + G CK+G C+F H R+ Q P LC + G C +GP C
Sbjct: 249 CQFYMKTGDCKFGTVCKFHHP----RDRQTPPPDCVLSSGEPLCVFYSRYGICKFGPSCK 304
Query: 485 FVH 493
F H
Sbjct: 305 FDH 307
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELR-------NLQRHPKYKTEL-CRTFHSVGFCPYGP 475
C + + G CK+G C+F H + N+ +P E C F +G C +G
Sbjct: 93 CEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGG 152
Query: 476 RCHFVH 493
C F H
Sbjct: 153 TCKFNH 158
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPR 478
C + G+C++G C+F H + R +P + C + G C +G
Sbjct: 48 CAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVT 107
Query: 479 CHFVHNAEEA 508
C F H +A
Sbjct: 108 CKFHHPRNKA 117
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVR 388
LC + G+CK+G C+F H +R
Sbjct: 287 LCVFYSRYGICKFGPSCKFDHPMR 310
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNL 403
C F G CK+G C+F H + NL
Sbjct: 139 CSYFLRIGQCKFGGTCKFNHPQTQSTNL 166
>At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 245
Score = 35.5 bits (78), Expect = 0.037
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 481
Y C F G C GD C+FAHGV E HP +Y+T C + G C
Sbjct: 93 YCAVACPAFRN-GACHRGDSCEFAHGVFE---YWLHPARYRTRAC----NAGNLCQRKVC 144
Query: 482 HFVHNAEEADAENHRRQEVHWHRSHRA 562
F H E+ + + + +R RA
Sbjct: 145 FFAHAPEQLRQSEGKHRCRYAYRPVRA 171
>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 468
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPR 478
C + GVC YG++C++ H +R ++P ++ C+ + G C +G
Sbjct: 51 CAYYMRTGVCGYGNRCRYNHPRDRASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGAS 110
Query: 479 CHFVHNAEEADAENH 523
C F H + +H
Sbjct: 111 CKFHHPKNAGGSMSH 125
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAH---GVRELRNLQRHP-----KYKTELCRTFHSVGFCPYGP 475
C+ + + G CK+G C+F H V N P + + C + GFC +G
Sbjct: 295 CQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGS 354
Query: 476 RCHFVH 493
C F H
Sbjct: 355 TCKFDH 360
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP--------KYKTELCRTFHSVGFCPYGP 475
C+ + + G CK+G C+F H ++ P + C + G C +G
Sbjct: 96 CQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFGI 155
Query: 476 RCHFVH 493
C F H
Sbjct: 156 TCKFHH 161
>At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 593
Score = 35.1 bits (77), Expect = 0.049
Identities = 19/80 (23%), Positives = 34/80 (42%)
Frame = +2
Query: 314 ELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 493
+LC F +G C G+ C F H N + + + +C G C GP C + H
Sbjct: 304 KLCFKFVCSGSCPRGEDCHFQH------NAEAREQCRRGVCLDLIIKGKCEKGPECSYKH 357
Query: 494 NAEEADAENHRRQEVHWHRS 553
++ + + + + +RS
Sbjct: 358 EFQDESSIQRKPRSENANRS 377
>At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 404
Score = 35.1 bits (77), Expect = 0.049
Identities = 19/80 (23%), Positives = 34/80 (42%)
Frame = +2
Query: 314 ELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 493
+LC F +G C G+ C F H N + + + +C G C GP C + H
Sbjct: 115 KLCFKFVCSGSCPRGEDCHFQH------NAEAREQCRRGVCLDLIIKGKCEKGPECSYKH 168
Query: 494 NAEEADAENHRRQEVHWHRS 553
++ + + + + +RS
Sbjct: 169 EFQDESSIQRKPRSENANRS 188
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 35.1 bits (77), Expect = 0.049
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Frame = +2
Query: 314 ELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL----------CRTFHSVGFC 463
E C + G CK+G C+F H + + R K + + C+ + G C
Sbjct: 114 EDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYYFRTGGC 173
Query: 464 PYGPRCHFVH 493
YG C F H
Sbjct: 174 KYGETCRFNH 183
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVREL-------RNLQRHPKYKTEL-CRTFHSVGFCPYGP 475
C+ + G CKYG+ C+F H + + N P E+ C + G C YG
Sbjct: 164 CKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGA 223
Query: 476 RCHFVH 493
C F H
Sbjct: 224 ECKFNH 229
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP--------KYKTELCRTFHSVGFCPYGP 475
C + + G CK+ C++ H L L + + +C + G C +GP
Sbjct: 352 CSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGP 411
Query: 476 RCHFVHNAE 502
C F H+ +
Sbjct: 412 ACRFDHSVQ 420
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVR 388
+C + G+CK+G C+F H V+
Sbjct: 397 ICTYYSRYGICKFGPACRFDHSVQ 420
>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 35.1 bits (77), Expect = 0.049
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRE--------LRNLQRHPKYKTELCRTFHSVGFCPYGP 475
C+ F G CK+G C++ H V L ++ + C F G C +GP
Sbjct: 288 CQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGP 347
Query: 476 RCHFVHN 496
C F H+
Sbjct: 348 ACKFDHS 354
Score = 31.5 bits (68), Expect = 0.60
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAH---------GVR-ELRNLQRHPKYKTELCRTFHSVGFCPY 469
C + GVC YG +C+F H GVR E L + +C+ F G C +
Sbjct: 35 CIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGH--PVCQHFMRTGTCKF 92
Query: 470 GPRCHFVH 493
G C + H
Sbjct: 93 GASCKYHH 100
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGV 385
C F + G+CK+G C+F H +
Sbjct: 334 CTHFAQHGICKFGPACKFDHSM 355
Score = 27.9 bits (59), Expect = 7.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAH 379
+C+ F G CK+G C++ H
Sbjct: 80 VCQHFMRTGTCKFGASCKYHH 100
>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
to floral homeotic protein HUA1 [Arabidopsis thaliana]
gi|16797661|gb|AAK01470
Length = 524
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +2
Query: 347 CKYGDKCQFAHGVRE----LRNLQRHPKYKTE-LCRTFHSVGFCPYGPRCHFVH 493
CKYG KC+F H E + P+ +E +C + G C +G C F H
Sbjct: 240 CKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTGKCKFGLSCKFHH 293
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVREL----RNLQRHPKYKTEL-----------CRTFHSV 454
C + + G CK+G++C+F H L + + P K L C +
Sbjct: 426 CDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKT 485
Query: 455 GFCPYGPRCHFVH 493
G C YG C F H
Sbjct: 486 GTCKYGATCKFDH 498
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAH-------GVRELRNL-----QRHPKYKTEL-CRTFHSVGF 460
C + + CK+G+ C+F H G+ + + + +P+ E C +
Sbjct: 180 CTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPDCPYYIKTQR 239
Query: 461 CPYGPRCHFVHNAEEA 508
C YG +C F H EEA
Sbjct: 240 CKYGSKCKFNHPREEA 255
>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 597
Score = 34.3 bits (75), Expect = 0.085
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 439
C F + G C GD C++AHGV E HP +Y+T LC+
Sbjct: 260 CPEFRK-GSCPKGDSCEYAHGVFE---SWLHPAQYRTRLCK 296
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +2
Query: 362 KCQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEA 508
+C F H G R R Y C F G CP G C + H E+
Sbjct: 235 ECPFVHPGENARRRDPRKYPYTCVPCPEFRK-GSCPKGDSCEYAHGVFES 283
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVREL 394
CR FEE G C GD C HG+ +
Sbjct: 206 CRDFEERGFCLRGDMCPMEHGMNRI 230
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVREL 394
CR FEE G C GD C HG+ +
Sbjct: 206 CRDFEERGFCLRGDMCPMEHGMNRI 230
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.20
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVRELRNL------QRHPKYKTE-------LCRTFHSVG 457
+CR F+ G C GD C+F+H + N R K+ + +CR F G
Sbjct: 135 VCRAFQR-GECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNREGRGVCRAFQR-G 192
Query: 458 FCPYGPRCHFVHNAEEA 508
C G C F H+ + A
Sbjct: 193 ECTRGDSCKFSHDEKRA 209
>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 397
YKT+LC F + G C C FAHG ELR
Sbjct: 7 YKTKLCILFNKTGDCS-RPNCTFAHGNAELR 36
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 419 YKTELCRTFHSVGFCPYGPRCHFVH-NAE 502
YKT+LC F+ G C P C F H NAE
Sbjct: 7 YKTKLCILFNKTGDCS-RPNCTFAHGNAE 34
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAH 379
+ ELCR F+ G C+YG+ C+F H
Sbjct: 2 RKELCRNFQR-GSCRYGENCRFLH 24
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 422 KTELCRTFHSVGFCPYGPRCHFVH 493
+ ELCR F G C YG C F+H
Sbjct: 2 RKELCRNFQR-GSCRYGENCRFLH 24
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +2
Query: 332 EEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFV--HNAEE 505
E+ C+Y DKC+F H + E Q+ + + C S C YG C F+ H
Sbjct: 116 EDVDSCQYKDKCRFNHDI-EAFKAQKADDIEGQ-CPFVASGMKCAYGLSCRFLGSHRDIT 173
Query: 506 ADAENHRRQEVH-WHRSHRADLWR 574
++++ + E++ +++ + LW+
Sbjct: 174 GNSDDKEKSEMNFFNKETQRLLWK 197
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 493
LC+ F G C G+ C+F+H ++ N +C TF+ C YG RC + H
Sbjct: 6 LCKFFVH-GSCLKGENCEFSHDSKDPPN---------NVC-TFYQKRICLYGSRCRYDH 53
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 493
LC+ F G C G+ C+F+H ++ N +C TF+ C YG RC + H
Sbjct: 6 LCKFFVH-GSCLKGENCEFSHDSKDPPN---------NVC-TFYQKRICLYGSRCRYDH 53
>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 354
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELR-------NLQRHPKYKTEL-CRTFHSVGFCPYGP 475
C + + G CK+G C+F H + N+ +P E C F +G C +G
Sbjct: 72 CEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGG 131
Query: 476 RCHFVH 493
C F H
Sbjct: 132 TCKFNH 137
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRE--------LRNLQRHPKYKTELCRTFHSVGFCPYGP 475
C+ + + G CK+G C+F H L ++ + LC + G C +GP
Sbjct: 228 CQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGP 287
Query: 476 RCHFVH 493
C F H
Sbjct: 288 SCKFDH 293
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPR 478
C + G+C++G C+F H + R +P + C + G C +G
Sbjct: 27 CAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVT 86
Query: 479 CHFVHNAEEA 508
C F H +A
Sbjct: 87 CKFHHPRNKA 96
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVR 388
LC + G+CK+G C+F H +R
Sbjct: 273 LCVFYSRYGICKFGPSCKFDHPMR 296
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNL 403
C F G CK+G C+F H + NL
Sbjct: 118 CSYFLRIGQCKFGGTCKFNHPQTQSTNL 145
>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 375
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELR-------NLQRHPKYKTEL-CRTFHSVGFCPYGP 475
C + + G CK+G C+F H + N+ +P E C F +G C +G
Sbjct: 93 CEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGG 152
Query: 476 RCHFVH 493
C F H
Sbjct: 153 TCKFNH 158
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRE--------LRNLQRHPKYKTELCRTFHSVGFCPYGP 475
C+ + + G CK+G C+F H L ++ + LC + G C +GP
Sbjct: 249 CQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGP 308
Query: 476 RCHFVH 493
C F H
Sbjct: 309 SCKFDH 314
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPR 478
C + G+C++G C+F H + R +P + C + G C +G
Sbjct: 48 CAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVT 107
Query: 479 CHFVHNAEEA 508
C F H +A
Sbjct: 108 CKFHHPRNKA 117
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 317 LCRPFEEAGVCKYGDKCQFAHGVR 388
LC + G+CK+G C+F H +R
Sbjct: 294 LCVFYSRYGICKFGPSCKFDHPMR 317
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 320 CRPFEEAGVCKYGDKCQFAHGVRELRNL 403
C F G CK+G C+F H + NL
Sbjct: 139 CSYFLRIGQCKFGGTCKFNHPQTQSTNL 166
>At2g46250.1 68415.m05751 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, muscle
(Swiss-Prot:P05661) [Drosophila melanogaster]
Length = 468
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 503 EADAENHRRQEVHWHRSHRADLWRRI*ATD 592
++D E+H R +H H RA L R+I ATD
Sbjct: 83 DSDVESHSRSPLHDHPPSRASLRRQIAATD 112
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 422 KTELCRTFHSVGFCPYGPRCHFVHNAEEADA 514
KTE F G CPYG +C ++H + D+
Sbjct: 103 KTEKLCKFWVDGNCPYGDKCRYLHCWSKGDS 133
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAH 379
KTE F G C YGDKC++ H
Sbjct: 103 KTEKLCKFWVDGNCPYGDKCRYLH 126
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +2
Query: 347 CKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEADAEN 520
C GD C F H +L ++P C F + GFC G C F H A +
Sbjct: 393 CMKGDDCPFDH------DLSKYP------CNNFITKGFCYRGDSCLFSHKGTPQSASD 438
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 395 RNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEADAENHR 526
R + K + ++C +F+++G C G C F H E +H+
Sbjct: 147 RRTPSYEKNRPKIC-SFYTIGQCKRGAECSFRHEMPETGELSHQ 189
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 383 VRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 493
+R R P++ ++C F+ GFC +G C + H
Sbjct: 145 LRTSRRSPSLPEFPVKICHYFNK-GFCKHGNNCRYFH 180
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHG 382
+ ++C F + G CK+G+ C++ HG
Sbjct: 157 FPVKICHYFNK-GFCKHGNNCRYFHG 181
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 17/80 (21%)
Frame = +2
Query: 305 YKTELCRPFEEAGVCKYGDKCQFAHGV-----------------RELRNLQRHPKYKTEL 433
++ +CR + G+C GD C F H RE + +H +
Sbjct: 61 FRQTVCRHWLR-GLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHTNEDIKE 119
Query: 434 CRTFHSVGFCPYGPRCHFVH 493
C + +GFCP GP C + H
Sbjct: 120 CNMY-KLGFCPNGPDCRYRH 138
>At5g57790.1 68418.m08529 expressed protein
Length = 205
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 255 SNAPPVNRLLRHQPQVATRPSSADRLKKRGFVNMGI 362
SN PP+ + P ++PS+ D + GF ++GI
Sbjct: 43 SNFPPLTTEIDTPPPSNSKPSTVDDISMEGFESLGI 78
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAH 379
KTE F G C YGDKC++ H
Sbjct: 110 KTEKVCNFWVDGNCTYGDKCRYLH 133
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAH 379
K +C F + G CK G+KCQF H
Sbjct: 147 KKSVCN-FWKDGNCKKGEKCQFLH 169
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +2
Query: 320 CRP--FEEAGVCKYGDKCQFAHG 382
C+P + G+CK G+ C+F HG
Sbjct: 132 CKPCVYFSRGLCKNGESCKFIHG 154
>At5g58730.1 68418.m07357 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 353
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 573 VVYERRIAIATLAAFSIDASLSTCDVATSTGHSFRFSPHELP 698
VV E A+ + +D+S +CD+ + GH FR+ P
Sbjct: 40 VVAETLGGAASFISNVLDSSSVSCDLVSKVGHDFRYEVTHSP 81
>At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 371
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 308 KTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQR 409
K+ LC F +AG C+ G KC+F+H + N+QR
Sbjct: 90 KSILCE-FFKAGQCQKGFKCKFSHDL----NIQR 118
>At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing
protein predicted proteins, Arabidopsis thaliana
Length = 381
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 413 PKYKTELCRTFHSVGFCPYGPRCH 484
P++ ++C F+ GFC +G CH
Sbjct: 163 PEFPLKICHYFNK-GFCKHGNNCH 185
>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 456
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 145 ELAPIGPIAPPMFPFIVCTGRV*FFKNRSPKSCRAD*CIM 26
+L P+ PI P + PF++ G ++ C++D C M
Sbjct: 221 DLKPVIPIGPLVSPFLLGDGEEETLDGKNLDFCKSDDCCM 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,849,797
Number of Sequences: 28952
Number of extensions: 287875
Number of successful extensions: 1096
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -