Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021717X
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    43   1e-05
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.22 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   8.2  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    24   8.2  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 43.2 bits (97), Expect = 1e-05
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +1

Query: 265 KIDKLESIYLFSLPIREFEIIDLFLGPSLND 357
           KI  +E IYL+SLPI+E++I+D FL P LND
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLND 77



 Score = 27.5 bits (58), Expect = 0.67
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +2

Query: 221 EWVPVTTLGRLV 256
           EWVPVT LGRLV
Sbjct: 33  EWVPVTKLGRLV 44


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 0.22
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 203 RAHDHGRDHDRVHEDRRGLYLHRVSRIRRENRHVHRLEQRPP 78
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 134  VSRIRRENRHVHRLEQRPPLLND 66
            VS  RR +    ++E  PP++ND
Sbjct: 971  VSSARRRDFKEEKIESAPPIIND 993


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 197 HDHGRDHDRVH 165
           HDHG DH   H
Sbjct: 134 HDHGHDHPHTH 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 846,644
Number of Sequences: 5004
Number of extensions: 10895
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)