Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021717X
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0756 + 5819367-5820038,5820847-5821005                           34   0.039
03_06_0386 + 33555682-33556344,33557138-33557299                       32   0.16 
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19...    28   2.5  
03_06_0170 - 32128619-32129647                                         27   4.4  

>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 33.9 bits (74), Expect = 0.039
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 265 KIDKLESIYLFSLPIREFEIIDLFLGPSLND 357
           KI K+E IYL SLP++E +I++  L P L D
Sbjct: 61  KIHKIEEIYLHSLPVKEHQIVEQ-LVPGLKD 90


>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 265 KIDKLESIYLFSLPIREFEIIDLFLGPSLND 357
           +  K+E IYL SLP++E +I++  L P L D
Sbjct: 58  RFSKIEEIYLHSLPVKEHQIVET-LVPGLKD 87



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 221 EWVPVTTLGRLVAXER 268
           +WVPVT LGRLV   R
Sbjct: 43  KWVPVTKLGRLVKEGR 58


>05_01_0029 +
           187769-188707,188971-189246,189978-190174,190263-190404,
           190584-190862,190941-191013,191331-191379,192169-192433,
           192576-192631,192777-192845,193028-193139,193682-193771,
           193955-194125,194449-194506,194970-195128,195379-195401
          Length = 985

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 173 RVHEDRRGLYLHRVSRIRRENRHVHRLEQR 84
           RVH  R+G  +H +SR    +  + RLE+R
Sbjct: 841 RVHHHRQGQVVHNLSRATNLDARLTRLEER 870


>03_06_0170 - 32128619-32129647
          Length = 342

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -1

Query: 248 GRVW*QEPTLSGXXCRAHDHGRDHDRVHEDRRGLYLHRVSRIRRENRHVHRLEQRP 81
           GR +   P   G  C A ++G + D V+          VS++  +   VH L   P
Sbjct: 249 GRAFFLAPLYFGASCSADEYGLEKDSVYASYAVDKCFEVSKVEDDETEVHDLIDAP 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,041,062
Number of Sequences: 37544
Number of extensions: 82018
Number of successful extensions: 288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)