Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021717X
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   8e-07
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 49.6 bits (113), Expect = 8e-07
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +1

Query: 265 KIDKLESIYLFSLPIREFEIIDLFLGPSLND 357
           KI  LE IYLFSLPI+EFEIID FLG +L D
Sbjct: 22  KIKTLEHIYLFSLPIKEFEIIDFFLGAALKD 52


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 354  IEGRAEEEINDLEFSDW*R 298
            + GRAEE IN  +FS+W R
Sbjct: 1325 VTGRAEEAINVSKFSEWRR 1343


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 203  RAHDHGRDH-DRVHEDR 156
            R H H RDH DR H+DR
Sbjct: 1716 RGHRHDRDHDDRDHDDR 1732


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,704,393
Number of Sequences: 59808
Number of extensions: 90361
Number of successful extensions: 255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)