Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021717X
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    36   0.009
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    27   5.2  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     26   9.1  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 35.9 bits (79), Expect = 0.009
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = +1

Query: 265 KIDKLESIYLFSLPIREFEIID 330
           KI  LE IYL SLPI+EFEIID
Sbjct: 71  KITTLEEIYLNSLPIKEFEIID 92



 Score = 29.5 bits (63), Expect = 0.74
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 209 EXQIEWVPVTTLGRLVAXERST 274
           E + EW PVT LGRLV  ++ T
Sbjct: 52  EKETEWTPVTKLGRLVKEKKIT 73


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 185 RDHDRVHEDRRGLYLHRVSRIRRENRHVHRLEQRPP 78
           R       DRRG    + SR R  +R  HR  +R P
Sbjct: 246 RKRSHSSSDRRGRRTSKESRRRSRSRDTHRTRRRSP 281


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical protein
            F13E6.6 protein.
          Length = 1340

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 215  QIEWVPVTTLGRLVAXERSTNSRAF 289
            +  W P+  L  L+A E++ + RAF
Sbjct: 1032 ETRWSPILPLAPLIAKEKANDKRAF 1056


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical protein
            F13E6.6 protein.
          Length = 1340

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 215  QIEWVPVTTLGRLVAXERSTNSRAF 289
            +  W P+  L  L+A E++ + RAF
Sbjct: 1032 ETRWSPILPLAPLIAKEKANDKRAF 1056


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 215  QIEWVPVTTLGRLVAXERSTNSRAF 289
            +  W P+  L  L+A E++ + RAF
Sbjct: 985  ETRWSPILPLAPLIAKEKANDKRAF 1009


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,798,694
Number of Sequences: 27780
Number of extensions: 62633
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)