Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021717X
(359 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 48 1e-06
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 45 1e-05
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 45 1e-05
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 45 1e-05
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 45 1e-05
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 43 5e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 0.93
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 0.93
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 0.93
At5g47430.1 68418.m05844 expressed protein 28 1.6
At1g22860.1 68414.m02854 TGF beta receptor associated protein-re... 28 2.1
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 2.8
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 26 8.7
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 26 8.7
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 48.4 bits (110), Expect = 1e-06
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +1
Query: 265 KIDKLESIYLFSLPIREFEIIDLFLGPSLND 357
KI K+E IYL SLP++E++IIDL +GPSL D
Sbjct: 59 KITKIEQIYLHSLPVKEYQIIDLLVGPSLKD 89
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 221 EWVPVTTLGRLVAXERST 274
+WVPVT LGRLV + T
Sbjct: 44 KWVPVTKLGRLVKEGKIT 61
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +1
Query: 265 KIDKLESIYLFSLPIREFEIIDLFLGPSLND 357
KI KLE IYL SLP++E++IID +GP+L D
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKD 97
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 215 QIEWVPVTTLGRLVAXERST 274
+ +WVPVT LGRLVA + T
Sbjct: 50 ETKWVPVTKLGRLVADNKIT 69
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +1
Query: 265 KIDKLESIYLFSLPIREFEIIDLFLGPSLND 357
KI KLE IYL SLP++E++IID +GP+L D
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKD 97
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 215 QIEWVPVTTLGRLVAXERST 274
+ +WVPVT LGRLVA + T
Sbjct: 50 ETKWVPVTKLGRLVADNKIT 69
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +1
Query: 265 KIDKLESIYLFSLPIREFEIIDLFLGPSLND 357
KI KLE IYL SLP++E++IID +GP+L D
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKD 97
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 215 QIEWVPVTTLGRLVAXERST 274
+ +WVPVT LGRLVA + T
Sbjct: 50 ETKWVPVTKLGRLVADNKIT 69
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +1
Query: 265 KIDKLESIYLFSLPIREFEIIDLFLGPSLND 357
KI KLE IYL SLP++E++IID +GP+L D
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKD 97
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 215 QIEWVPVTTLGRLVAXERST 274
+ +WVPVT LGRLVA + T
Sbjct: 50 ETKWVPVTKLGRLVADNKIT 69
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 43.2 bits (97), Expect = 5e-05
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = +1
Query: 268 IDKLESIYLFSLPIREFEIIDLFLGPSLND 357
I ++E IYL SLP++E++IID+ +GP+L D
Sbjct: 69 IKQIEQIYLHSLPVKEYQIIDMLIGPTLKD 98
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 221 EWVPVTTLGRLVA 259
+WVPVT LGRLVA
Sbjct: 53 KWVPVTKLGRLVA 65
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 29.1 bits (62), Expect = 0.93
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 185 RDHDRVHEDRRGLYLHRVSRIRRENRHVHRLEQRPP 78
RDHDR +DR G R SR R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 29.1 bits (62), Expect = 0.93
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 185 RDHDRVHEDRRGLYLHRVSRIRRENRHVHRLEQRPP 78
RDHDR +DR G R SR R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 29.1 bits (62), Expect = 0.93
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 185 RDHDRVHEDRRGLYLHRVSRIRRENRHVHRLEQRPP 78
RDHDR +DR G R SR R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 194 DHGRDHDRVHEDRRGLYLHRVSRIRRENRHVHRLEQRPP 78
+H R DR EDR + H R H HR PP
Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPP 755
>At1g22860.1 68414.m02854 TGF beta receptor associated
protein-related contains weak similarity to TGF beta
receptor associated protein-1 [Homo sapiens]
gi|3150052|gb|AAC16903
Length = 947
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 173 RVHEDRRGLYLHRVSRIRRENRHVHRLEQR 84
RVH R+G +H +SR + + RLE+R
Sbjct: 852 RVHHHRQGQIVHNISRALDVDSRLARLEER 881
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.5 bits (58), Expect = 2.8
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = -1
Query: 344 GPRKRSMISNSLIGKENK*MLSSLSIFXSRQDGRVW*QEPTLSGXXCRAHDHGRDHDRV- 168
GP + + S+I ++ K S S + P S R HD GRD DR
Sbjct: 843 GPNEGNRNQKSIIERKEKREDSQESSKKRHRGENKSQSPPRKSSTRERDHDLGRDRDRER 902
Query: 167 HEDRRGLYLHRVSRIRRENRHVH 99
H DR + R RRE H
Sbjct: 903 HRDRDRQHDLNRDRDRREKSSSH 925
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 197 HDHGRDHDRVHEDRRG-LYLHRVSRIRRENRHVHRL 93
HDHG HD H G Y R ++ +++ + +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 197 HDHGRDHDRVHEDRRGLYLH 138
HDH DHD H D + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,621,872
Number of Sequences: 28952
Number of extensions: 61816
Number of successful extensions: 165
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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