Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021716
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   3.4  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.9  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 450 TKPEIAAIVDTYERLYDRPLPS 515
           T   +AAI      L DRPLP+
Sbjct: 124 TTDNVAAISGVLRSLLDRPLPA 145


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 261 QAFTREYGRDLIEDLKSELGGHFEDVIVAL 350
           Q F  E  R L+EDL++E    + DV+V +
Sbjct: 144 QIFNEETKR-LVEDLEAECHKPYIDVVVPI 172


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -1

Query: 420 LHPCPY--PPCNGAAPGTGTPQGESSE 346
           L P PY  P  + AAP T + + +SSE
Sbjct: 108 LRPHPYLSPLFHSAAPRTASRETKSSE 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,297
Number of Sequences: 336
Number of extensions: 3606
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)