Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021716
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    28   1.6  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    27   2.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.9  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   6.5  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   8.6  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 31  FGSAENRRSPF-SIFDTNPRILT 96
           +G   N +SPF  IF TNPRIL+
Sbjct: 180 YGFQGNEKSPFIKIFTTNPRILS 202


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = -3

Query: 526 GAHVL--GSGRSYNRSYVSTIAAISGLVLVQRISTRVSSSVPIPSMQRCSSWHRYSSGGV 353
           GAH++  G GR +N   +  IAAI+    V++I    +  +  P+       ++  +GG+
Sbjct: 50  GAHLVVGGDGRYFNFHAIQVIAAIAAGNGVEKIIVGTNGYLSTPAASHIIRKYKL-TGGI 108

Query: 352 IRATITSSK*PPNSDF 305
           I  T + +   P +DF
Sbjct: 109 I-LTASHNAGGPKNDF 123


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -3

Query: 508 SGRSYNRSYVSTIAAISGLVLVQRISTRVSSSVPIPSMQRCSSWHRYSSGGVIRATITSS 329
           S  SY+++Y S     +   L    +   ++ +P+P  +R S    Y+SG V  AT  S+
Sbjct: 159 SSGSYSQTYQSNANYTASSPLP---TASANAPLPVPPPRRVSQNSSYASGSVPAATAAST 215

Query: 328 K*P 320
             P
Sbjct: 216 ASP 218


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 555 RRRRKSPDVSEHMCSAAGGRTIVRMC 478
           RRRRK+   +   CSA GGR +   C
Sbjct: 107 RRRRKATIRNVDYCSACGGRGLFICC 132


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 435  ILCTRTKPEIAAIVDTYERLYD 500
            + CTR + E  A VD YE+L D
Sbjct: 2156 LYCTRVQKERFASVDEYEKLKD 2177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,108
Number of Sequences: 5004
Number of extensions: 59579
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)