Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021715
         (634 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q92994 Cluster: Transcription factor IIIB 90 kDa subuni...    38   0.15 
UniRef50_Q4PCH6 Cluster: Predicted protein; n=1; Ustilago maydis...    33   4.3  
UniRef50_Q0LFN7 Cluster: Chromosome segregation protein SMC; n=1...    33   7.5  
UniRef50_Q0FV06 Cluster: Putative uncharacterized protein; n=1; ...    32   10.0 

>UniRef50_Q92994 Cluster: Transcription factor IIIB 90 kDa subunit;
           n=43; Euteleostomi|Rep: Transcription factor IIIB 90 kDa
           subunit - Homo sapiens (Human)
          Length = 677

 Score = 38.3 bits (85), Expect = 0.15
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = +2

Query: 5   DEEYIDSLIMSADEAKHKTKLWNKVNAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184
           D+  ID  I++  EA+ K +LW + NA Y                               
Sbjct: 453 DDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKR 512

Query: 185 XXAINAATAGEAIEKMLAEKKM 250
              I A+TA EAIEKML +KK+
Sbjct: 513 REPIQASTAREAIEKMLEQKKI 534


>UniRef50_Q4PCH6 Cluster: Predicted protein; n=1; Ustilago
           maydis|Rep: Predicted protein - Ustilago maydis (Smut
           fungus)
          Length = 183

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +2

Query: 323 NLIRKLPPAPEVHRRRLLLGRRW 391
           NL+  LPP PEVH RR  L R+W
Sbjct: 45  NLVLGLPPQPEVHARRHPLKRKW 67


>UniRef50_Q0LFN7 Cluster: Chromosome segregation protein SMC; n=1;
            Herpetosiphon aurantiacus ATCC 23779|Rep: Chromosome
            segregation protein SMC - Herpetosiphon aurantiacus ATCC
            23779
          Length = 1192

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 430  PSSSVSGVSEILEPPSSQEQPASVDLWGWRQLPYQVSKRAVLSERPT 290
            P+SS SG+  I +PP  + QP S+   G R L       A+L   PT
Sbjct: 1062 PNSSESGIDIIAQPPGKRRQPLSLLSGGERSLTAVALLVALLKVNPT 1108


>UniRef50_Q0FV06 Cluster: Putative uncharacterized protein; n=1;
           Roseovarius sp. HTCC2601|Rep: Putative uncharacterized
           protein - Roseovarius sp. HTCC2601
          Length = 166

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 433 APSSSVSGVSEILEPPSSQEQPASVDLWGWRQL 335
           AP S VS + +++EPP     P     WGW  L
Sbjct: 11  APESLVSLIGQLIEPPQPLPVPMVPQTWGWAAL 43


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 382,023,823
Number of Sequences: 1657284
Number of extensions: 4825163
Number of successful extensions: 16626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16616
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)