Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021715
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0434 - 17130947-17131174                                         28   7.1  
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479...    27   9.4  

>08_02_0434 - 17130947-17131174
          Length = 75

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 333 GSCRQPQRSTDAGCSWDDGGSRISDTPETEEEGAIRSPHARXPLQAAHARH 485
           GSC    RS  A CS D G +   +T   EE+    +  A  P +AA  RH
Sbjct: 22  GSCEM-SRSISAACSADAGRTTTGNTGAAEEDADDAAEKADEP-RAAAWRH 70


>02_04_0625 - 24547435-24547569,24547674-24547742,24547871-24547997,
            24548086-24548209,24548714-24548832,24548953-24549044,
            24549124-24549329,24549429-24549534,24549636-24549740,
            24549836-24549942,24550030-24550253,24550341-24550468,
            24550945-24551022,24551338-24552012,24552655-24552798,
            24552985-24553064,24553958-24554029,24554124-24554343,
            24554460-24554590,24555118-24555243,24555567-24555695,
            24556156-24556318,24556408-24556545,24557198-24557317,
            24557521-24557682,24557751-24557876,24558172-24558342,
            24558435-24558590,24559061-24559408
          Length = 1526

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 26/79 (32%), Positives = 32/79 (40%)
 Frame = +3

Query: 258  DQLRHPEEPRPVGRSDSTALFET*YGSCRQPQRSTDAGCSWDDGGSRISDTPETEEEGAI 437
            D   HP  P P  R+D   L  T Y +   P  +  A   +      + D  E EE   +
Sbjct: 1162 DDESHP--PPPPSRAD---LERTDYAAAAPPAYAYMA--EFQSHEQELGDRREGEEAEMV 1214

Query: 438  RSPHARXPLQAAHARHSRP 494
            R   A   L A HARH RP
Sbjct: 1215 R---AAEQLVAVHARHQRP 1230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,783,335
Number of Sequences: 37544
Number of extensions: 149312
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)