Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021715
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_33327| Best HMM Match : Tombus_movement (HMM E-Value=3.5)           30   1.8  
SB_23263| Best HMM Match : Herpes_UL73 (HMM E-Value=3.3)               30   1.8  
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)                 28   5.5  

>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 400  ILEPPSSQEQPASVDLWGWRQLPYQVSKRAVLSER 296
            I+ PPS Q  P +  L G+RQ  +++ ++ VL E+
Sbjct: 2011 IMPPPSIQTTPQTSSLTGYRQQRHKLRRQIVLHEK 2045


>SB_33327| Best HMM Match : Tombus_movement (HMM E-Value=3.5)
          Length = 527

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 345 QPQRSTDAGCSWD-DGGSRISDTPETEEEGAIRSPHARXPLQAAHARHSRPADTTNPV 515
           + +R   +G S D +G   +++ P  +EEG  ++  A     A H +H+      NPV
Sbjct: 92  EEERQFTSGLSMDWEGWQMLNEVPRRKEEGTKKAAVAAGASIAEHIKHAIADKVKNPV 149


>SB_23263| Best HMM Match : Herpes_UL73 (HMM E-Value=3.3)
          Length = 292

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 400 ILEPPSSQEQPASVDLWGWRQLPYQVSKRAVLSER 296
           I+ PPS Q  P +  L G+RQ  +++ ++ VL E+
Sbjct: 86  IMPPPSIQTTPQTSSLTGYRQQRHKLRRQIVLHEK 120


>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2342

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 345 QPQRSTDAGCSWD-DGGSRISDTPETEEEGAIRSPHARXPLQAAHARHSRPADTTNPV 515
           + +R   +G S D +G   +++ P  +EEG  ++  A     A H +H+      NPV
Sbjct: 637 EEERQFTSGLSMDWEGWQMLNEVPRRKEEGTKKAAVAAGASIAEHIKHAIADKVKNPV 694


>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
          Length = 419

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +3

Query: 348 PQRSTDAGCSWDDGGSRISDTPETEEEG 431
           P  ST+ G S  DGGS   DTP TE  G
Sbjct: 27  PSSSTNRGNSTPDGGSNAVDTP-TEASG 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,806,230
Number of Sequences: 59808
Number of extensions: 153630
Number of successful extensions: 398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)