Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021715
         (634 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U75276-1|AAB38876.1|  677|Homo sapiens TFIIB related factor hBRF...    38   0.022
U28838-1|AAC50170.1|  675|Homo sapiens TFIIIB 90 kDa subunit pro...    38   0.022
BC086856-1|AAH86856.1|  650|Homo sapiens BRF1 protein protein.         38   0.022
BC071637-1|AAH71637.1|  486|Homo sapiens BRF1 protein protein.         38   0.022
AJ297407-1|CAC04513.1|  473|Homo sapiens transcription factor II...    38   0.022
AK125024-1|BAC86024.1|  193|Homo sapiens itiation factor IIIB (S...    34   0.48 

>U75276-1|AAB38876.1|  677|Homo sapiens TFIIB related factor hBRF
           protein.
          Length = 677

 Score = 38.3 bits (85), Expect = 0.022
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = +2

Query: 5   DEEYIDSLIMSADEAKHKTKLWNKVNAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184
           D+  ID  I++  EA+ K +LW + NA Y                               
Sbjct: 453 DDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKR 512

Query: 185 XXAINAATAGEAIEKMLAEKKM 250
              I A+TA EAIEKML +KK+
Sbjct: 513 REPIQASTAREAIEKMLEQKKI 534


>U28838-1|AAC50170.1|  675|Homo sapiens TFIIIB 90 kDa subunit
           protein.
          Length = 675

 Score = 38.3 bits (85), Expect = 0.022
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = +2

Query: 5   DEEYIDSLIMSADEAKHKTKLWNKVNAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184
           D+  ID  I++  EA+ K +LW + NA Y                               
Sbjct: 451 DDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKR 510

Query: 185 XXAINAATAGEAIEKMLAEKKM 250
              I A+TA EAIEKML +KK+
Sbjct: 511 REPIQASTAREAIEKMLEQKKI 532


>BC086856-1|AAH86856.1|  650|Homo sapiens BRF1 protein protein.
          Length = 650

 Score = 38.3 bits (85), Expect = 0.022
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = +2

Query: 5   DEEYIDSLIMSADEAKHKTKLWNKVNAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184
           D+  ID  I++  EA+ K +LW + NA Y                               
Sbjct: 426 DDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKR 485

Query: 185 XXAINAATAGEAIEKMLAEKKM 250
              I A+TA EAIEKML +KK+
Sbjct: 486 REPIQASTAREAIEKMLEQKKI 507


>BC071637-1|AAH71637.1|  486|Homo sapiens BRF1 protein protein.
          Length = 486

 Score = 38.3 bits (85), Expect = 0.022
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = +2

Query: 5   DEEYIDSLIMSADEAKHKTKLWNKVNAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184
           D+  ID  I++  EA+ K +LW + NA Y                               
Sbjct: 262 DDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKR 321

Query: 185 XXAINAATAGEAIEKMLAEKKM 250
              I A+TA EAIEKML +KK+
Sbjct: 322 REPIQASTAREAIEKMLEQKKI 343


>AJ297407-1|CAC04513.1|  473|Homo sapiens transcription factor II
           B-related factor protein.
          Length = 473

 Score = 38.3 bits (85), Expect = 0.022
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = +2

Query: 5   DEEYIDSLIMSADEAKHKTKLWNKVNAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184
           D+  ID  I++  EA+ K +LW + NA Y                               
Sbjct: 249 DDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKR 308

Query: 185 XXAINAATAGEAIEKMLAEKKM 250
              I A+TA EAIEKML +KK+
Sbjct: 309 REPIQASTAREAIEKMLEQKKI 330


>AK125024-1|BAC86024.1|  193|Homo sapiens itiation factor IIIB (S.
           cerevisiae) (BRF1).  protein.
          Length = 193

 Score = 33.9 bits (74), Expect = 0.48
 Identities = 22/74 (29%), Positives = 30/74 (40%)
 Frame = +2

Query: 29  IMSADEAKHKTKLWNKVNAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAINAAT 208
           I++  EA+ K +LW + NA Y                                  I A+T
Sbjct: 20  ILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKRREPIQAST 79

Query: 209 AGEAIEKMLAEKKM 250
           A EAIEKML +KK+
Sbjct: 80  AREAIEKMLEQKKI 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,601,580
Number of Sequences: 237096
Number of extensions: 733108
Number of successful extensions: 2196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2196
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)