Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021715
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23528-4|ABC71848.1|  160|Caenorhabditis elegans Calsyntenin/alc...    28   4.8  
U23528-3|AAK31388.1|  167|Caenorhabditis elegans Calsyntenin/alc...    28   4.8  
U23528-2|AAK31387.1|  984|Caenorhabditis elegans Calsyntenin/alc...    28   4.8  
AY091591-1|AAM00045.1|  984|Caenorhabditis elegans calsyntenin p...    28   4.8  

>U23528-4|ABC71848.1|  160|Caenorhabditis elegans
           Calsyntenin/alcadein homolog protein1, isoform c
           protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 342 RQPQRSTDAGCSWDDGGSRISDTPETEEE 428
           R+ +R +D G  WDD G  I+  P  + E
Sbjct: 58  RRQKRQSDGGMHWDDSGMNITVNPLDDVE 86


>U23528-3|AAK31388.1|  167|Caenorhabditis elegans
           Calsyntenin/alcadein homolog protein1, isoform b
           protein.
          Length = 167

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 342 RQPQRSTDAGCSWDDGGSRISDTPETEEE 428
           R+ +R +D G  WDD G  I+  P  + E
Sbjct: 65  RRQKRQSDGGMHWDDSGMNITVNPLDDVE 93


>U23528-2|AAK31387.1|  984|Caenorhabditis elegans
           Calsyntenin/alcadein homolog protein1, isoform a
           protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 342 RQPQRSTDAGCSWDDGGSRISDTPETEEE 428
           R+ +R +D G  WDD G  I+  P  + E
Sbjct: 882 RRQKRQSDGGMHWDDSGMNITVNPLDDVE 910


>AY091591-1|AAM00045.1|  984|Caenorhabditis elegans calsyntenin
           protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 342 RQPQRSTDAGCSWDDGGSRISDTPETEEE 428
           R+ +R +D G  WDD G  I+  P  + E
Sbjct: 882 RRQKRQSDGGMHWDDSGMNITVNPLDDVE 910


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,729,273
Number of Sequences: 27780
Number of extensions: 111203
Number of successful extensions: 356
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)