Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021714
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)             126   1e-29
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)                   29   3.1  
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)                     29   5.4  
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)                      29   5.4  
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_57234| Best HMM Match : Phage_fiber (HMM E-Value=4.5e-08)           29   5.4  
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 28   7.2  
SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)                       28   9.5  
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)              28   9.5  

>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score =  126 bits (305), Expect = 1e-29
 Identities = 54/71 (76%), Positives = 61/71 (85%)
 Frame = +3

Query: 297 VPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFF 476
           VP+K++KF    EHEYI NFKILQ+ FKK G DKI+P+DKLVKGRFQDNFEFLQWFKKFF
Sbjct: 43  VPLKKVKFGAKQEHEYIANFKILQSAFKKCGCDKIIPVDKLVKGRFQDNFEFLQWFKKFF 102

Query: 477 DANYGGAAYDA 509
           DANYGG  Y+A
Sbjct: 103 DANYGGQEYNA 113


>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
          Length = 649

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 399 IVPIDKLVKGRFQDNFEFLQWFKKFFDANYGGAAYDAWRSEKVC 530
           IV + K   G    +   + W  KFFDA +      AW  E +C
Sbjct: 5   IVYLSKAFVGNIDKDSVKIHWLTKFFDARFVRFYPLAWYGESIC 48


>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
          Length = 264

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 28/106 (26%), Positives = 44/106 (41%)
 Frame = -3

Query: 712 IHNFRITLGTLTYP*QINWWRSDCCISFPNGLGSSCDFGDRGDGFLSGSGPRGGRAPVPH 533
           I+  +I L  ++ P + ++ R +      N LGS          +     P G R   P 
Sbjct: 113 INKGKIQLKPVSIPNRCDYKRDEEKAPAMNELGSLLKTMKSKSSYSLDKSPTGDRDREPE 172

Query: 532 GQTFSLRHASYAAPP*LASKNFLNHCKNSKLSWKRPFTSLSMGTIL 395
            +T  LR  S A  P   S++  N    +K   ++P  S SMG +L
Sbjct: 173 WETLKLRKRSDAYLPRQPSESVENPAFQAKSILRKP-RSRSMGDML 217


>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
          Length = 465

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 28/106 (26%), Positives = 44/106 (41%)
 Frame = -3

Query: 712 IHNFRITLGTLTYP*QINWWRSDCCISFPNGLGSSCDFGDRGDGFLSGSGPRGGRAPVPH 533
           I+  +I L  ++ P + ++ R +      N LGS          +     P G R   P 
Sbjct: 314 INKGKIQLKPVSIPNRCDYKRDEEKAPAMNELGSLLKTMKSKSSYSLDKSPTGDRDREPE 373

Query: 532 GQTFSLRHASYAAPP*LASKNFLNHCKNSKLSWKRPFTSLSMGTIL 395
            +T  LR  S A  P   S++  N    +K   ++P  S SMG +L
Sbjct: 374 WETLKLRKRSDAYLPRQPSESVENPAFQAKSILRKP-RSRSMGDML 418


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 420  VKGRFQDNFEFLQWFKKFFDANYGGAAYD 506
            V  + +DNF  +QW K F D  Y  + +D
Sbjct: 1775 VSKQMKDNFPCMQWTKNFLDNAYSTSEHD 1803


>SB_57234| Best HMM Match : Phage_fiber (HMM E-Value=4.5e-08)
          Length = 355

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 413 VNGYYLVHTHLFKTSL*YFKVLYIFMFQICLKFDSFHWYTAREQHVHELAI-GGPVHNSS 237
           + G +L +  +    L Y  +    +  + ++ D  H+   R  H+H LAI G  +HN +
Sbjct: 213 IRGDHLHYLAIRGDHLHYLAIRGDHLHYLAIRGDHLHYLAIRGDHLHNLAIRGDHLHNLA 272

Query: 236 I 234
           I
Sbjct: 273 I 273



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 413 VNGYYLVHTHLFKTSL*YFKVLYIFMFQICLKFDSFHWYTAREQHVHELAI-GGPVHNSS 237
           + G +L +  +    L Y  +    +  + ++ D  H+   R  H+H LAI G  +HN +
Sbjct: 23  IRGDHLHNLAIRGDQLHYLAIRGDHLHNLAIRGDHLHYLAIRGDHLHNLAIKGDHLHNLA 82

Query: 236 I 234
           +
Sbjct: 83  L 83



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 413 VNGYYLVHTHLFKTSL*YFKVLYIFMFQICLKFDSFHWYTAREQHVHELAI-GGPVHNSS 237
           + G +L +  +    L Y  +    +  + ++ D  H+   R  H+H LAI G  +HN +
Sbjct: 203 IRGDHLHYLAIRGDHLHYLAIRGDHLHYLAIRGDHLHYLAIRGDHLHYLAIRGDHLHNLA 262

Query: 236 I 234
           I
Sbjct: 263 I 263


>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1256

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 209  IVSSQTLRRSKSCVQGRLLPVHGHAVPWQ 295
            I+ S+TLR S  C+    +P H   V W+
Sbjct: 1053 IIMSETLRDSLDCMYDARIPTHWKKVSWE 1081


>SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)
          Length = 404

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 500 CRTSIVGVKEFLE--PLQKLKIILETTLHQFVNG 405
           C T+I GVKEFL   P +K    L+  L Q+  G
Sbjct: 306 CPTAIPGVKEFLNSVPAKKCTARLDLALQQYEKG 339


>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
          Length = 749

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
 Frame = -3

Query: 652 RSDCCISFPN---------GLGSSCDFGDRGDGFLSGS 566
           R+D C+S PN         G+G +CD    GDG   GS
Sbjct: 509 RADNCVSVPNADQVDTDSDGIGDACDSDTDGDGVSDGS 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,804,813
Number of Sequences: 59808
Number of extensions: 497914
Number of successful extensions: 1143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)