Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021714
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    27   0.14 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.5  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   9.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.5  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = -3

Query: 418 SLSMGTILSTPIFLKPACNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQ*AALYTTL 239
           SL +G ++ T  F     +I    I S +   + ++L    LP N +S+ +    +   +
Sbjct: 418 SLGIGEVI-TVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRI 476

Query: 238 RSSQSLTGDNHSPTLAYH 185
           R+S ++ GD +   + YH
Sbjct: 477 RTSINVLGDGYGAGIVYH 494


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 535 HGQTFSLRHASYAAPP*LAS--KNFLNHCKNSKLSWKRPFT 419
           H QT SL+H  Y  PP L+    +++N    S   +  P T
Sbjct: 355 HHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCT 395


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 328 FVLNLILFIGTLPGNSMSMNWQ*AALYTTLRSSQSLTGDNH 206
           FV+ L      L G      +Q   LY+  RSS+SLT   H
Sbjct: 29  FVVGLERVAEELMGRRRWKQYQ-DTLYSGTRSSESLTAQAH 68


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 637 ISFPNGLGSSCDFGDRGDG 581
           +SF +  GS   F + GDG
Sbjct: 378 VSFIDAAGSEVKFDEHGDG 396


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 169 ENLSRHDMLAWVNDC 213
           +NL+++ M+ W  DC
Sbjct: 13  KNLNQNQMMIWALDC 27


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 637 ISFPNGLGSSCDFGDRGDG 581
           +SF +  GS   F + GDG
Sbjct: 468 VSFIDAAGSEVKFDEHGDG 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,939
Number of Sequences: 438
Number of extensions: 4716
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)