Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021714
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    91   6e-19
At5g62500.1 68418.m07844 microtubule-associated EB1 family prote...    91   7e-19
At3g47690.1 68416.m05194 microtubule-associated EB1 family prote...    90   1e-18
At2g03200.1 68415.m00273 aspartyl protease family protein contai...    30   1.5  
At5g11050.1 68418.m01291 myb family transcription factor contain...    28   7.7  

>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 39/80 (48%), Positives = 54/80 (67%)
 Frame = +3

Query: 255 AAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRF 434
           A +CQ MD + PG+VPM ++ F    E+E IQN+K+LQ  F K+ + K + + KLVKGR 
Sbjct: 41  AVHCQLMDSVHPGTVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRP 100

Query: 435 QDNFEFLQWFKKFFDANYGG 494
            DN EF+QW KK+ D+  GG
Sbjct: 101 LDNLEFMQWMKKYCDSVNGG 120



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 175 LSRHDMLAWVNDCLQSNFAKIEELCTG 255
           + R ++LAW+N  LQ N +K+EE C+G
Sbjct: 14  VGRSEILAWINSTLQLNLSKVEEACSG 40


>At5g62500.1 68418.m07844 microtubule-associated EB1 family protein
           similar to EBF3-S (Microtubule-associated protein) [Homo
           sapiens] GI:12751131; contains Pfam profiles PF00307:
           Calponin homology (CH) domain, PF03271: EB1 protein
          Length = 293

 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 39/80 (48%), Positives = 55/80 (68%)
 Frame = +3

Query: 255 AAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRF 434
           A  CQ +DM FPG VPM ++ F+   E+E IQN+K++Q  F K+ + K + +++LVKGR 
Sbjct: 41  AVQCQMLDMTFPGVVPMHKVNFEAKNEYEMIQNYKVMQEVFTKLKITKPLEVNRLVKGRP 100

Query: 435 QDNFEFLQWFKKFFDANYGG 494
            DN EFLQW K+F D+  GG
Sbjct: 101 LDNLEFLQWLKRFCDSINGG 120



 Score = 31.9 bits (69), Expect = 0.48
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 175 LSRHDMLAWVNDCLQSNFAKIEELCTG 255
           + R+++L+W+ND L  N ++IEE  +G
Sbjct: 14  VGRNEILSWINDRLHLNLSRIEEAASG 40


>At3g47690.1 68416.m05194 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profile PF03271: EB1 protein
          Length = 276

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 40/80 (50%), Positives = 54/80 (67%)
 Frame = +3

Query: 255 AAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRF 434
           A  CQ +DM FPG VPM ++ F    E++ IQN+K+LQ  F K+ + K + I++LVKGR 
Sbjct: 41  AVQCQMLDMTFPGVVPMHKVNFDAKNEYDMIQNYKVLQDVFNKLKITKPLEINRLVKGRP 100

Query: 435 QDNFEFLQWFKKFFDANYGG 494
            DN EFLQW K+F D+  GG
Sbjct: 101 LDNLEFLQWLKRFCDSINGG 120



 Score = 31.1 bits (67), Expect = 0.83
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 175 LSRHDMLAWVNDCLQSNFAKIEELCTG 255
           + R+++L W+ND L  N +++EE  +G
Sbjct: 14  VGRNEILTWINDRLHLNLSRVEEAASG 40


>At2g03200.1 68415.m00273 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 461

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 625 NGLGSSCDFGDRGDGFLSGSGPRG-GRAPV 539
           +G+G  C   + GDGF  GSG  G GR P+
Sbjct: 212 SGIGFGCGVENEGDGFSQGSGLVGLGRGPL 241


>At5g11050.1 68418.m01291 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA binding domain;
           identical to cDNA putative transcription factor MYB64
           (MYB64) GI:15375309
          Length = 423

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 529 QTFSLRHASYAAPP*LASKNFLNHCKNSKLSWKRPFTSLSMGTILST 389
           Q  SL H   AAPP  A + FLN  KN  L +K+   S+    + +T
Sbjct: 7   QEKSLAHG--AAPPLTAVERFLNGQKNEALCFKKQERSIDRPIVKTT 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,829,463
Number of Sequences: 28952
Number of extensions: 359105
Number of successful extensions: 967
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)