Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021712
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   6.0  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 413 PSPLVVQAYPTPAPG 369
           P+ ++ + YP+P PG
Sbjct: 315 PTSVMTELYPSPVPG 329


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 392 PVPPVVKAPRSPMIPPSAPRSLGSASCDS 478
           P+P V   P  P+ PP+      SA C+S
Sbjct: 176 PLPQVPPLPLPPIFPPTMINP--SAICES 202


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 663 DDEHKRHHLPR 631
           DD HK HHL +
Sbjct: 271 DDAHKTHHLDK 281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,133
Number of Sequences: 336
Number of extensions: 3586
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)