Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021712
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 32 0.075
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.099
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 31 0.23
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.40
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 30 0.40
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.70
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 3.7
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.9
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 6.5
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 32.3 bits (70), Expect = 0.075
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 392 PVPPVVKAPRSPMIPPSAPRSLGSASCDS 478
P PP V ++P IPP APR+L +AS DS
Sbjct: 379 PKPPSVPTIQAP-IPPEAPRNLTNASVDS 406
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.099
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 392 PVPPVVKAPRSPMIPPSAPRSL--GSASCDSVPGSPGVSPYL 511
P PP + P +PPSAP SL G+ + +P S ++P L
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 368 PPGLELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGVSP 505
PP L P + AP +P +PPSAP + +P +P + P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAP--IAPPLPAGMPAAPPLPP 471
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Frame = +2
Query: 395 VPPVVKA--------PRSPMIPPSAPRSLGSASCDSVP-GSPGVSP 505
+PP+ A P P +PPSAP SL ++ S+P G+P P
Sbjct: 403 LPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 30.7 bits (66), Expect = 0.23
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 434 PPSAPRSLGSASCDSVPGSPGVSPYLHRRQCLRRQP 541
PP PR+L S+ D+ VS H R RQP
Sbjct: 292 PPEVPRNLNSSLVDAAESLANVSQQQHHRHPFARQP 327
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.40
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 395 VPPVVKAPRSPMIPPSA-PRSLGSASCDSVPGSPG 496
VPP AP P PPSA P L ++S SVP +PG
Sbjct: 1714 VPPPPSAPPMPAGPPSAPPPPLPASSAPSVP-NPG 1747
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 29.9 bits (64), Expect = 0.40
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 371 PGLELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGV 499
PG+ PVP A PM+ P + S G A ++VP PG+
Sbjct: 530 PGMNARGPVP----AQGRPMMMPGSVPSAGPAEAEAVPAVPGM 568
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.1 bits (62), Expect = 0.70
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 368 PPGLELDRPVPPVVKA-PRSP--MIPPSAPRSLGSASCDSVPGSPGVS 502
PPG+ P P V A P P PP AP S ++ ++ PGVS
Sbjct: 532 PPGMPAPFPGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVS 579
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 88 EPIDTIAGSSSAVYAAKLARVVTHAQ 11
EP+ IA +YAAK+A +HA+
Sbjct: 145 EPVSIIADHIEIIYAAKIAAHASHAK 170
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 601 CHRLLEKFHYSWEMM--PLVLVIMNYARSDLDEASRKIY 711
CH LE FHY + +V + NYA D K+Y
Sbjct: 1472 CHNCLEWFHYECVGLSSDIVSTLSNYACPDCCSKEGKLY 1510
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 126 SEPGASSSGVPRAPPNCARCRNHRLKIELKGHKRYCKYQHCTCKSA 263
S P A R+P +C CR ++K + + CK ++ C A
Sbjct: 3 SSPPALKKFRKRSPKSCLICRRRKVKCDRQQPCSRCKERNEVCTYA 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,584
Number of Sequences: 5004
Number of extensions: 50820
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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