Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021712
(745 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69883-5|CAA93739.2| 260|Caenorhabditis elegans Hypothetical pr... 55 6e-08
U49831-8|AAA93409.2| 280|Caenorhabditis elegans Hypothetical pr... 52 6e-07
Z78060-1|CAB01491.1| 83|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AL032637-20|CAA21612.2| 250|Caenorhabditis elegans Hypothetical... 43 2e-04
AF101315-1|AAC69225.2| 369|Caenorhabditis elegans Hypothetical ... 39 0.004
Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical pr... 38 0.008
AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative tran... 38 0.008
U97001-3|AAB52258.2| 449|Caenorhabditis elegans Hypothetical pr... 37 0.017
Z78060-2|CAB01490.1| 114|Caenorhabditis elegans Hypothetical pr... 36 0.023
Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical pr... 36 0.040
Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical pr... 35 0.053
Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical pr... 35 0.053
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 35 0.053
Z73905-5|CAD44103.1| 175|Caenorhabditis elegans Hypothetical pr... 34 0.12
AF535153-1|AAN17799.1| 175|Caenorhabditis elegans putative tran... 34 0.12
AC024848-5|AAK68545.1| 254|Caenorhabditis elegans Hypothetical ... 34 0.12
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 33 0.21
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 33 0.21
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 32 0.37
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 32 0.37
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 32 0.37
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 32 0.37
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 32 0.37
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 32 0.49
Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical pr... 32 0.49
Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical pr... 32 0.49
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 31 0.65
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 31 0.86
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 31 1.1
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 31 1.1
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 30 1.5
AC006768-3|AAK70665.1| 246|Caenorhabditis elegans Hypothetical ... 30 2.0
AC006768-2|AAF60574.1| 309|Caenorhabditis elegans Hypothetical ... 30 2.0
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 2.6
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 29 2.6
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 2.6
AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 29 2.6
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 2.6
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 29 3.5
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 3.5
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 29 3.5
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 3.5
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 3.5
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 29 3.5
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 29 3.5
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 29 3.5
AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 29 3.5
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical pr... 29 4.6
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 4.6
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 29 4.6
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 4.6
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 4.6
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 29 4.6
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 28 6.1
U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protei... 28 6.1
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 28 6.1
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 28 6.1
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 28 6.1
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 28 6.1
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 28 6.1
AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen prot... 28 6.1
Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical pr... 28 8.0
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 8.0
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 28 8.0
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 28 8.0
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 28 8.0
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 8.0
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 28 8.0
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 28 8.0
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 28 8.0
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 28 8.0
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 28 8.0
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 28 8.0
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 28 8.0
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 28 8.0
>Z69883-5|CAA93739.2| 260|Caenorhabditis elegans Hypothetical
protein C27C12.6 protein.
Length = 260
Score = 54.8 bits (126), Expect = 6e-08
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = +3
Query: 168 PNCARCRNHRLKIELKGHKRYCKYQHCTCKSAAL 269
P CARCRNH L LKGHKR+CKY+ C C+ L
Sbjct: 20 PKCARCRNHGLVSWLKGHKRHCKYKECACEKCNL 53
>U49831-8|AAA93409.2| 280|Caenorhabditis elegans Hypothetical
protein F10C1.5 protein.
Length = 280
Score = 51.6 bits (118), Expect = 6e-07
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +3
Query: 168 PNCARCRNHRLKIELKGHKRYCKYQHCTCKSAAL 269
P CARCRNH LKGHKRYC+++ C C L
Sbjct: 31 PKCARCRNHGTTSALKGHKRYCQWKDCMCAKCTL 64
>Z78060-1|CAB01491.1| 83|Caenorhabditis elegans Hypothetical
protein C34D1.1 protein.
Length = 83
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 168 PNCARCRNHRLKIELKGHKRYCKYQHCTC 254
PNC +C H K LKGHKR C ++ C C
Sbjct: 38 PNCQKCGQHGRKSRLKGHKRSCPFRECPC 66
>AL032637-20|CAA21612.2| 250|Caenorhabditis elegans Hypothetical
protein Y43F8C.10 protein.
Length = 250
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Frame = +3
Query: 111 DCEERSEPGASSSGVPRAP-------PNCARCRNHRLKIELKGHKRYCKYQHCTC 254
+C +SE SSG + PNC RC H + LKGHKR C ++ C C
Sbjct: 89 ECTSQSETTNESSGEDKDDGKPKERRPNCQRCAQHSVVNRLKGHKRACPFRDCFC 143
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 174 CARCRNHRLKIELKGHKRYCKYQHCTCKSAALPQTGSG*WQSKRQSDGPR 323
C RC NH L+ + K HK C ++ C C + + + Q DG R
Sbjct: 19 CQRCLNHGLREKRKNHKLSCTFRFCQCSNCIMVERRRQLNSRLMQIDGSR 68
>AF101315-1|AAC69225.2| 369|Caenorhabditis elegans Hypothetical
protein T22H9.4 protein.
Length = 369
Score = 38.7 bits (86), Expect = 0.004
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 174 CARCRNHRLKIELKGHKRYCKYQHCTCKSAAL 269
C +C+NH + + K HK+ C+Y C C+ L
Sbjct: 137 CQKCKNHNVLVWKKNHKKECQYSSCECQQCNL 168
>Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical
protein Y53C12B.5a protein.
Length = 290
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 168 PNCARCRNHRLKIELKGHKR-YCKYQHCTCKSAAL 269
P+CARC H + + L+GHKR C++ C C L
Sbjct: 92 PHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTL 126
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 174 CARCRNHRLKIELKGHKRYCKYQHCTCKSAAL 269
C RC NH KGHK C+Y C C+ +
Sbjct: 28 CQRCLNHGELKPRKGHKPDCRYLKCPCRECTM 59
>AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative
transcription factor MAB-3 protein.
Length = 290
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 168 PNCARCRNHRLKIELKGHKR-YCKYQHCTCKSAAL 269
P+CARC H + + L+GHKR C++ C C L
Sbjct: 92 PHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTL 126
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 174 CARCRNHRLKIELKGHKRYCKYQHCTCKSAAL 269
C RC NH KGHK C+Y C C+ +
Sbjct: 28 CQRCLNHGELKPRKGHKPDCRYLKCPCRECTM 59
>U97001-3|AAB52258.2| 449|Caenorhabditis elegans Hypothetical
protein K08B12.2a protein.
Length = 449
Score = 36.7 bits (81), Expect = 0.017
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 174 CARCRNHRLKIELKGHKRYCKYQHCTCKS 260
C +C H ++ LKGH C + +C+CK+
Sbjct: 61 CRKCEGHGQQVVLKGHASRCPFNNCSCKT 89
>Z78060-2|CAB01490.1| 114|Caenorhabditis elegans Hypothetical
protein C34D1.2 protein.
Length = 114
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 174 CARCRNHRLKIELKGHKRYCKYQHCTCKSAAL 269
C RC NH + K HK C Y CTC+ L
Sbjct: 43 CQRCLNHDVPRPRKNHKCECPYADCTCEKCGL 74
>Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical
protein E01B7.1 protein.
Length = 410
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 371 PGLELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSV-PGSPGVSPYLHR 517
P L +PPV R PMIPPS P S A V P +P + P L R
Sbjct: 348 PALNRQSTIPPVAMTQR-PMIPPSLPSSTPPAPLKPVAPPTPPIFPLLDR 396
>Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical
protein F13G11.1b protein.
Length = 470
Score = 35.1 bits (77), Expect = 0.053
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 174 CARCRNHRLKIELKGHKRYCKYQHCTCKS 260
C +C H K+ LK H C Y C CKS
Sbjct: 45 CRKCEGHGEKVILKNHSPQCPYILCNCKS 73
>Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical
protein F13G11.1a protein.
Length = 510
Score = 35.1 bits (77), Expect = 0.053
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 174 CARCRNHRLKIELKGHKRYCKYQHCTCKS 260
C +C H K+ LK H C Y C CKS
Sbjct: 85 CRKCEGHGEKVILKNHSPQCPYILCNCKS 113
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 35.1 bits (77), Expect = 0.053
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 365 QPPGLELDRPVPPVVK-APRSPMIPPSAPRSLGSASCDSVPGSPG 496
+PP + PP K P+ P PP P G A D PG+PG
Sbjct: 136 RPPQQPCEPITPPPCKPCPQGPAGPPGPPGPAGDAGSDGSPGAPG 180
>Z73905-5|CAD44103.1| 175|Caenorhabditis elegans Hypothetical
protein C32C4.5a protein.
Length = 175
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 153 VPRAPPNCARCRNHRLKIE-LKGHKRYCKYQHCTCKSAAL 269
+P+ C C NH + + KGHK+ C Y+ C C AL
Sbjct: 1 MPKEQYMCQLCANHGIFNQPKKGHKQKCPYRTCPCSLCAL 40
>AF535153-1|AAN17799.1| 175|Caenorhabditis elegans putative
transcription factor MAB-23 protein.
Length = 175
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 153 VPRAPPNCARCRNHRLKIE-LKGHKRYCKYQHCTCKSAAL 269
+P+ C C NH + + KGHK+ C Y+ C C AL
Sbjct: 1 MPKEQYMCQLCANHGIFNQPKKGHKQKCPYRTCPCSLCAL 40
>AC024848-5|AAK68545.1| 254|Caenorhabditis elegans Hypothetical
protein Y67D8A.3 protein.
Length = 254
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 174 CARCRNHRLKIELKGHKRYCKYQHCTCKSAA 266
C +C H LKGH C Y+ C+C + A
Sbjct: 31 CRKCEGHGTYAILKGHAGVCPYKDCSCGTCA 61
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 365 QPPGLELDRPVPPVVK-APRSPMIPPSAPRSLGSASCDSVPGSPG 496
+PP D PP + P+ P PP P G A + PGSPG
Sbjct: 131 RPPQQPCDPITPPPCQPCPQGPPGPPGPPGPSGDAGSNGNPGSPG 175
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGLSNSSPGGC 364
PG PG + P + GADG G G G T GG G P C
Sbjct: 242 PGAPGPKGPNGNPGQPGADGNPGAPGQSG--TPGGVGEKGICPKYC 285
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPGG 367
PG+PG + Q P +G +G G GA G + +PGG
Sbjct: 233 PGQPGHDGQPGAPGPKGPNGN-PGQPGADGNPGAPGQSGTPGG 274
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 386 DRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPG 496
D+ +P ++ P+ P PP A G + +PG+PG
Sbjct: 175 DQEIPGCIQCPQGPQGPPGAVGPCGPSGIPGLPGNPG 211
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 368 PPGL--ELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGVSPY 508
PPGL + P PP P P P P G A D PG PGV+ Y
Sbjct: 259 PPGLPGQCGPPGPPGYTPPPGP---PGTPGVQGEAGQDGEPGVPGVTGY 304
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGL-SNSSPGG 367
PG PG Q P + GA G G G RGA T G G N+ P G
Sbjct: 201 PGAPGDNGQPGFPGQDGAPGQPGADGQRGAGTPGAPGAPGNAGPAG 246
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 416 PRSPMIPPSAPRSLGSASCDSVPGSPG 496
P P PP P G VPG+PG
Sbjct: 112 PTKPTCPPGPPGPPGQPGAPGVPGAPG 138
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGL-SNSSPGG 367
PG PG Q P + GA G G G RGA T G G N+ P G
Sbjct: 185 PGAPGDNGQPGFPGQDGAPGQPGADGQRGAGTPGAPGAPGNAGPAG 230
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 416 PRSPMIPPSAPRSLGSASCDSVPGSPG 496
P P PP P G VPG+PG
Sbjct: 96 PTKPTCPPGPPGPPGQPGAPGVPGAPG 122
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 498 TPGEPGTESQLAEPRERGADG-GIMGLRGAFTTGGTGLSNSSPG 370
TPG+PG + Q P + G G G G GA G +N PG
Sbjct: 181 TPGQPGQQGQDGRPGQNGRRGRGTPGAPGAPGAAGAPGNNGQPG 224
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 365 QPPGLELDRPVPPVVK-APRSPMIPPSAPRSLGSASCDSVPGSPG 496
+PP D PP + P+ P PP P G A + PGSPG
Sbjct: 131 RPPQQPCDPITPPPCQPCPQGPPGPPGPPGPSGDAGGNGNPGSPG 175
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGLSNSSPGGC 364
PG PG + P + GADG G G G T GG G P C
Sbjct: 242 PGAPGPKGPNGNPGQPGADGNPGAPGQSG--TPGGVGEKGICPKYC 285
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPGG 367
PG+PG + Q P +G +G G GA G + +PGG
Sbjct: 233 PGQPGHDGQPGAPGPKGPNGN-PGQPGADGNPGAPGQSGTPGG 274
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 398 PPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPG 496
P VK P P PP G A D PG+PG
Sbjct: 142 PSCVKCPEGPAGPPGPEGPAGPAGSDGQPGAPG 174
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 398 PPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPG 496
PP P P PP P + G A + PG+PG
Sbjct: 148 PPCKPCPDGPAGPPGPPGAPGDAGTNGAPGAPG 180
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 386 DRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPG 496
D P P++ P PP P G A D PG+PG
Sbjct: 212 DAPSEPLIPGEPGPQGPPGPP---GQAGPDGQPGAPG 245
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 271 RRQAAGNGKANGNQTGPGSGRSACACAGIRNTAPGAGVG*ACTTSGEGA 417
RRQ+ G+ A+G + GSG +C G+ + P G +GA
Sbjct: 97 RRQSYGDSGASGGFSSGGSGGGSCCSCGVGSAGPAGSPGQDGAPGNDGA 145
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 398 PPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPG 496
PP P+ P PP P G A + PGSPG
Sbjct: 110 PPCQPCPQGPPGPPGPPGPSGDAGGNGNPGSPG 142
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGLSNSSPGGC 364
PG PG + P + GADG G G G T GG G P C
Sbjct: 209 PGAPGPKGPNGNPGQPGADGNPGAPGQSG--TPGGVGEKGICPKYC 252
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPGG 367
PG+PG + Q P +G +G G GA G + +PGG
Sbjct: 200 PGQPGHDGQPGAPGPKGPNGN-PGQPGADGNPGAPGQSGTPGG 241
>Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical
protein T11B7.3b protein.
Length = 273
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 407 VKAPRSPMIPPSAPRSLGSASCDSVPGSPGVSPYLHRRQCLRRQP 541
V+ PR P PP S+G D G+PG + +H + L P
Sbjct: 140 VQCPRGPPGPPGDVGSVGQRGPDGASGAPGAASQIHGKPGLPGPP 184
>Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical
protein T11B7.3a protein.
Length = 297
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 407 VKAPRSPMIPPSAPRSLGSASCDSVPGSPGVSPYLHRRQCLRRQP 541
V+ PR P PP S+G D G+PG + +H + L P
Sbjct: 140 VQCPRGPPGPPGDVGSVGQRGPDGASGAPGAASQIHGKPGLPGPP 184
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 498 TPGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGLSNSSPG 370
TPGE GT + EP E G G G G RG GT + +PG
Sbjct: 173 TPGEAGTPGPVGEPGETGGPGPQGRPGQRGEPGQPGTVHTPGNPG 217
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 498 TPGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPG 370
TPG PGT P G GG+ G T GG G +S G
Sbjct: 35 TPGGPGTPGGPGTPGGPGTPGGLGTPGGPGTPGGPGTPETSGG 77
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +1
Query: 256 KVPPYRRQAAGNGKANGNQTGPGSGRSACACAGIRNTAPGAG 381
K P AG GK G + G G+G A AG R +A GAG
Sbjct: 701 KKQPGEEPPAGRGK--GGKKGRGAGAVGAAAAGGRKSAGGAG 740
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +1
Query: 256 KVPPYRRQAAGNGKANGNQTGPGSGRSACACAGIRNTAPGAG 381
K P AG GK G + G G+G A AG R +A GAG
Sbjct: 701 KKQPGEEPPAGRGK--GGKKGRGAGAVGAAAAGGRKSAGGAG 740
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 395 VPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGVS 502
+PPV + R M+P + RS+ S S PG G S
Sbjct: 474 IPPVTRKVRKSMMPSESIRSVSRNSSTSTPGPRGSS 509
>AC006768-3|AAK70665.1| 246|Caenorhabditis elegans Hypothetical
protein Y45G12B.2b protein.
Length = 246
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 31 APTLPRIRPTRTQQ-WCRWAHGNAACPMTARSVPNPAPP 144
+P + ++R Q W R A G P R VP+PAPP
Sbjct: 49 SPLIEKLREQLKQSNWARAALGLPTLPELNRPVPSPAPP 87
>AC006768-2|AAF60574.1| 309|Caenorhabditis elegans Hypothetical
protein Y45G12B.2a protein.
Length = 309
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 31 APTLPRIRPTRTQQ-WCRWAHGNAACPMTARSVPNPAPP 144
+P + ++R Q W R A G P R VP+PAPP
Sbjct: 112 SPLIEKLREQLKQSNWARAALGLPTLPELNRPVPSPAPP 150
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -2
Query: 504 GDTPGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGLSNSSPGGCI 361
G PG PGT + E G DG G GL G + + PGGCI
Sbjct: 98 GCPPGPPGTPGEQGPQGESGPDGDDGKPGLAGEV----VAIVHDLPGGCI 143
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -2
Query: 504 GDTPGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGLSNSSPGGCI 361
G PG PGT + E G DG G GL G + + PGGCI
Sbjct: 98 GCPPGPPGTPGEQGPQGESGPDGDDGKPGLAGEV----VAIVHDLPGGCI 143
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 365 QPPGLELDRPVPPVVK-APRSPMIPPSAPRSLGSASCDSVPGSPG 496
+PP + PP K P+ P PP P + G PG PG
Sbjct: 135 KPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPG 179
>AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen
protein 112 protein.
Length = 297
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 365 QPPGLELDRPVPPVVK-APRSPMIPPSAPRSLGSASCDSVPGSPG 496
+PP D PP K P+ P P G A D PG PG
Sbjct: 129 RPPQAPCDPITPPPCKPCPQGPPGVQGPPGPAGDAGLDGQPGGPG 173
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 365 QPPGLELDRPVPPVVK-APRSPMIPPSAPRSLGSASCDSVPGSPG 496
+PP + PP K P+ P PP P + G PG PG
Sbjct: 135 KPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPG 179
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 365 QPPGLELDRPVPPVVK-APRSPMIPPSAPRSLGSASCDSVPGSPG 496
+PP + PP K P+ P PP P + G PG PG
Sbjct: 133 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPG 177
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +2
Query: 392 PVPPVVKAPRSPMIPPSAPRSLGSA------SCDSVPGSPG 496
P P + P P PP AP G A D+ PGSPG
Sbjct: 146 PCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPG 186
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +2
Query: 377 LELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPG 496
++ R P VK PR P P + G D PG PG
Sbjct: 137 IQCPRQQPGCVKCPRGPAGPTGSIGQAGRPGPDGRPGQPG 176
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 365 QPPGLELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPG 496
+PP + PP P P PP AP + G + PG PG
Sbjct: 132 KPPQSPCEPLTPP--PCPACPPGPPGAPGAPGKPGSEGPPGPPG 173
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPGGC 364
PG PG + P GADG A T+GG G P C
Sbjct: 242 PGAPGPKGPNGNPGAPGADGNPGAPGQAGTSGGAGEKGICPKYC 285
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPGGC 364
PG PG + P GADG A T+GG G P C
Sbjct: 242 PGAPGPKGPNGNPGAPGADGNPGAPGQAGTSGGAGEKGICPKYC 285
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 365 QPPGLELDRPVPPVVK-APRSPMIPPSAPRSLGSASCDSVPGSPG 496
+PP + PP K P+ P PP P + G PG PG
Sbjct: 128 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPG 172
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +2
Query: 392 PVPPVVKAPRSPMIPPSAPRSLGSA------SCDSVPGSPG 496
P P + P P PP AP G A D+ PGSPG
Sbjct: 141 PCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPG 181
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGLSNSSPG 370
PGEPG + P E GADG G G G G N PG
Sbjct: 213 PGEPGQPGEPGGPGEPGADGRPGHPGRAGPPGPPGDNGPNGEPG 256
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +2
Query: 368 PPGLELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPG 496
PPG P PP P+ P PP G A +PG PG
Sbjct: 223 PPG----PPGPPGPPGPQGPPGPPGKDGQPGKAGPPGLPGDPG 261
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 365 QPPGLELDRPVPPVVK-APRSPMIPPSAPRSLGSASCDSVPGSPG 496
+PP + PP K P+ P PP P + G PG PG
Sbjct: 128 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPG 172
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +2
Query: 392 PVPPVVKAPRSPMIPPSAPRSLGSA------SCDSVPGSPG 496
P P + P P PP AP G A D+ PGSPG
Sbjct: 141 PCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPG 181
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPGGC 364
PG PG + P GADG A T+GG G P C
Sbjct: 242 PGAPGPKGPNGNPGAPGADGNPGAPGQAGTSGGAGEKGICPKYC 285
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPGGC 364
PG PG + P GADG A T+GG G P C
Sbjct: 242 PGAPGPKGPNGNPGAPGADGNPGAPGQAGTSGGAGEKGICPKYC 285
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +2
Query: 371 PGLELDRPVPPVVKAP--RSPMIPPSAPRSLGSASCDSVPGSPG 496
PG +P P+ P P PP AP S G PG PG
Sbjct: 118 PGRPPAQPCDPITPPPCRPCPQGPPGAPGSPGPQGDAGAPGQPG 161
>AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein
49 protein.
Length = 283
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 492 GEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPG 370
G PG + L EP +G + G+ G GA G N PG
Sbjct: 213 GRPGPQGPLGEPGAQG-EPGVDGKDGALGAPGRKAENGRPG 252
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPGGC 364
PG PG + P GADG A T GG G P C
Sbjct: 242 PGAPGPKGPNGNPGAPGADGNPGAPGQAGTAGGAGEKGICPKYC 285
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPG 370
PG+PG+ +P + GA GG G +GA G + PG
Sbjct: 214 PGQPGSRGPAGQPGKDGAQGG-PGEKGANGEPGQPGRDGQPG 254
>Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical
protein F13D12.3 protein.
Length = 245
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 362 IQPPGLELDRPVP-PVVKAPRSPMIPPSAPRSL-GSASCDSVPGSPGVSP 505
+ PP E+ PVP P + AP P+ PP+ L G + +PGV+P
Sbjct: 143 VPPPVPEVSEPVPEPPIPAP-GPVAPPTPSGPLFGGVEPGAGALTPGVAP 191
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 371 PGLELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGV 499
PG+ P PP P AP GSA D + GSPG+
Sbjct: 553 PGMN-GYPGPPGPNGDHGDCGMPGAPGKPGSAGSDGLSGSPGL 594
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 132 PGASSSGVPRAPPNCARCRNHRLKIELKGHKRYCKYQHCTCKSAALPQT 278
PG G + NC ++ RL I+ K KY H TC AL T
Sbjct: 350 PGRKLYGEVSSASNCTDFQSRRLGIKYKTADGTTKYAH-TCNGTALAST 397
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 368 PPGLELDRPVPPVVKA-PRSPMIP--PSAPRSLGSASCDSVPGSPGVSPYLHRRQCLRRQ 538
PPG P PP P SP +P +AP G PG+PG + ++C R +
Sbjct: 152 PPGPP-GPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPKGPPGAPGAPEHQESQECPRGE 210
Query: 539 P 541
P
Sbjct: 211 P 211
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +2
Query: 371 PGLELDRPVPPVVKAPRSPMI--PPSAPRSLGSASCDSVPGSPGV 499
PG +P P+ P P PP P G PGSPG+
Sbjct: 129 PGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGPPGDSGEPGSPGL 173
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPG 370
PG+PG EP + G+ GG G +GA G + PG
Sbjct: 216 PGQPGQRGPAGEPGKDGSPGG-QGEKGASGEPGQPGRDGQPG 256
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 132 PGASSSGVPRAPPNCARCRNHRLKIELKGHKRYCKYQHCTCKSAALPQT 278
PG G + NC ++ RL I+ K KY H TC AL T
Sbjct: 350 PGRKLYGEVSSASNCTDFQSRRLGIKYKTADGTTKYAH-TCNGTALAST 397
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 416 PRSPMIPPSAPRSLGSASCDSVPGSPG 496
P P PP + GSA D PG PG
Sbjct: 197 PAGPAGPPGPDGNPGSAGADGQPGGPG 223
>Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical
protein D2023.7 protein.
Length = 336
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPG 370
PG+PG+ P ERG G + G+RG TGG+ ++ PG
Sbjct: 155 PGKPGS------PGERGKPG-LRGMRGPRGTGGSPGTDGYPG 189
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 416 PRSPMIPPSAPRSLGSASCDSVPGSPG 496
P P PP + GSA D PG PG
Sbjct: 197 PAGPAGPPGPDGNPGSAGADGQPGGPG 223
>Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical
protein F54B11.1 protein.
Length = 339
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 359 GIQPPGLELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGVS 502
G+ PPG + +P P+ PP P G+ PGSPG S
Sbjct: 207 GMGPPGQSMSNVLP-------GPLGPPGPPGQPGNHGLAGQPGSPGQS 247
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +1
Query: 286 GNGKANGNQTGPGSGRSACACAGIRNTAPGAGVG 387
GNG GN G G+G A AG N A GAG G
Sbjct: 854 GNGAGAGNGNGAGAGNGNGAGAGNGNGA-GAGNG 886
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +1
Query: 286 GNGKANGNQTGPGSGRSACACAGIRNTAPGAGVG*ACTTSGEGATQ 423
GNG GN G G+G A AG N GAG G A + Q
Sbjct: 862 GNGAGAGNGNGAGAGNGNGAGAGNGN---GAGAGDASAAAAAAQAQ 904
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
protein R08B4.1a protein.
Length = 1137
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +1
Query: 286 GNGKANGNQTGPGSGRSACACAGIRNTAPGAGVG 387
GNG GN G G+G A AG N A GAG G
Sbjct: 831 GNGAGAGNGNGAGAGNGNGAGAGNGNGA-GAGNG 863
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +1
Query: 286 GNGKANGNQTGPGSGRSACACAGIRNTAPGAGVG*ACTTSGEGATQ 423
GNG GN G G+G A AG N GAG G A + Q
Sbjct: 839 GNGAGAGNGNGAGAGNGNGAGAGNGN---GAGAGDASAAAAAAQAQ 881
>U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protein
58 protein.
Length = 305
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 371 PGLELDRPVPPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGVSPY 508
PG P P+ P P PP P G+ D +PG G Y
Sbjct: 155 PGRCAQCPAGPM--GPPGPRGPPGVPGITGAPGLDGIPGRHGTPGY 198
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +1
Query: 286 GNGKANGNQTGPGSGRSACACAGIRNTAPGAGVG 387
GNG GN G G+G A AG N A GAG G
Sbjct: 484 GNGAGAGNGNGAGAGNGNGAGAGNGNGA-GAGNG 516
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +1
Query: 286 GNGKANGNQTGPGSGRSACACAGIRNTAPGAGVG*ACTTSGEGATQ 423
GNG GN G G+G A AG N GAG G A + Q
Sbjct: 492 GNGAGAGNGNGAGAGNGNGAGAGNGN---GAGAGDASAAAAAAQAQ 534
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPGGCI 361
PG PG Q EP G D G G G +++ PGGCI
Sbjct: 97 PGPPGEGGQSGEPGHDG-DDGKPGAPGVI----VAITHDIPGGCI 136
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 286 GNGKANGNQTGPGSGRSACACAGI-RNTAPGAGVG*ACTTSGEGA 417
G+G+++G +G GSG S+ +G A G G G A SGEG+
Sbjct: 78 GSGESSGETSGEGSGESSGEASGEGSGEASGEGSGEA---SGEGS 119
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGLSNSSPGGCI 361
PG PG Q EP G D G G G +++ PGGCI
Sbjct: 97 PGPPGEGGQSGEPGHDG-DDGKPGAPGVI----VAITHDIPGGCI 136
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 286 GNGKANGNQTGPGSGRSACACAGI-RNTAPGAGVG*ACTTSGEGA 417
G+G+++G +G GSG S+ +G A G G G A SGEG+
Sbjct: 78 GSGESSGETSGEGSGESSGEASGEGSGEASGEGSGEA---SGEGS 119
>AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen protein
72 protein.
Length = 205
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGLSNSSPG 370
PGEPG E Q + G+ G GI G +G +TG G N PG
Sbjct: 94 PGEPGREGQPGKAGGPGSPGRDGIRGSKG--STGDKG-PNGPPG 134
>Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical
protein C01H6.1 protein.
Length = 307
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -2
Query: 495 PGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGLSNSSPG 370
PGEPG + P RG DG G G G+ G S+ PG
Sbjct: 163 PGEPGPNGKPGNPGYRGEDGKPGRPGEPGSSGLPGRPGSDGKPG 206
>Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical
protein F54C9.4 protein.
Length = 287
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 498 TPGEPGTESQLAEPRERGADG--GIMGLRGAFTTGGTGLSNSSPG 370
TPG PG++ + + + G DG G G +G G N PG
Sbjct: 219 TPGWPGSQGEPGKNGDSGVDGEQGPQGPQGPDGQPGRDADNGQPG 263
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +2
Query: 371 PGLELDRPVPPVVKAPRSPMI--PPSAPRSLGSASCDSVPGSPGV 499
PG +P P+ P P PP P G PGSPG+
Sbjct: 129 PGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGL 173
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein
145 protein.
Length = 294
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 504 GDTPGEPGTESQLAEPRERGADGGIMGLRGAFTTGGTGL-SNSSPGG 367
GD G+PGT Q P + GAD G RG+ G G N+ P G
Sbjct: 189 GDN-GQPGTPGQDGFPGQPGAD----GQRGSGAPGAPGAPGNAGPAG 230
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 592 VENCHRLLEKFHYSWEMMPLVLVIMNYA-RSDLDEASRKIY 711
+ N H L Y W + PLV V+ +A R +++A++ +
Sbjct: 677 IRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSF 717
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 365 QPPGLELDRPVPPVVKAPRSPMIPPSAP 448
QPP + PVP + P P +PP +P
Sbjct: 152 QPPPTPIPTPVPILEPPPPPPPVPPLSP 179
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +2
Query: 371 PGLELDRPVPPVVKAPRSPMI--PPSAPRSLGSASCDSVPGSPGV 499
PG +P P+ P P PP P G PGSPG+
Sbjct: 129 PGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGL 173
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 398 PPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGVS 502
PP ++ +PP+ P+S G + S+PG+P V+
Sbjct: 370 PPTPRSAAPSDVPPT-PKSNGHIANGSIPGTPSVA 403
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 398 PPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGVS 502
PP ++ +PP+ P+S G + S+PG+P V+
Sbjct: 320 PPTPRSAAPSDVPPT-PKSNGHIANGSIPGTPSVA 353
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 398 PPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGVS 502
PP ++ +PP+ P+S G + S+PG+P V+
Sbjct: 370 PPTPRSAAPSDVPPT-PKSNGHIANGSIPGTPSVA 403
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 398 PPVVKAPRSPMIPPSAPRSLGSASCDSVPGSPGVS 502
PP ++ +PP+ P+S G + S+PG+P V+
Sbjct: 370 PPTPRSAAPSDVPPT-PKSNGHIANGSIPGTPSVA 403
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform b protein.
Length = 871
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 592 VENCHRLLEKFHYSWEMMPLVLVIMNYA-RSDLDEASRKIY 711
+ N H L Y W + PLV V+ +A R +++A++ +
Sbjct: 435 IRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSF 475
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 592 VENCHRLLEKFHYSWEMMPLVLVIMNYA-RSDLDEASRKIY 711
+ N H L Y W + PLV V+ +A R +++A++ +
Sbjct: 371 IRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSF 411
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform c protein.
Length = 1036
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 592 VENCHRLLEKFHYSWEMMPLVLVIMNYA-RSDLDEASRKIY 711
+ N H L Y W + PLV V+ +A R +++A++ +
Sbjct: 600 IRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSF 640
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 592 VENCHRLLEKFHYSWEMMPLVLVIMNYA-RSDLDEASRKIY 711
+ N H L Y W + PLV V+ +A R +++A++ +
Sbjct: 677 IRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSF 717
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,056
Number of Sequences: 27780
Number of extensions: 348884
Number of successful extensions: 2871
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2750
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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