Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021712
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.32 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.99 

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 256 KVPPYRRQAAGNGKANGNQTGPGSGRSACACAGIRNTAPGAGVG 387
           + PPY R    N     +Q   GSG       G R+ +P  G+G
Sbjct: 79  RFPPYNRMDMRNATYYQHQQDHGSGMD--GMGGYRSASPSPGMG 120


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 141 SSSGVPRAPPNCARCRNHRLKIEL 212
           S++G PR+P + +RC   R KI++
Sbjct: 318 SNNGSPRSPESNSRCSVKREKIKI 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,010
Number of Sequences: 438
Number of extensions: 4122
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)