Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021711
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 28 1.5
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 27 1.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 27 2.5
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 2.5
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 2.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.5
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 27 3.4
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 3.4
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 3.4
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.4
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 26 4.4
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 26 5.9
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm... 26 5.9
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma... 25 7.8
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 479 TKLYCSVSLCRSDIASLICSFKEIHSFL 396
+K+Y + + CR ++A +C+ +H FL
Sbjct: 105 SKVYLTFTACRRNLAGDVCAVLRVHRFL 132
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 27.5 bits (58), Expect = 1.9
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 8 VRKINNYLIELSK*RK*IYL-SLLCRTQNMDTMSLKEIQSKLLLWESSENP-LAPLNSDQ 181
+ N+YL+ + K + L L Q + T+ E + L W + P LA ++D+
Sbjct: 289 INPFNDYLLATASADKTVALWDLRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDR 348
Query: 182 REAILDLESLILGVNDEGGENGPIE 256
R I DLE + E E+G E
Sbjct: 349 RVCIWDLEKIGEEQTPEDAEDGSPE 373
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 92 MDTMSLKEIQSKLLLWESSENPLAPLNSDQREAILDLESLILGVNDEGGEN 244
MD SL + ++LLL ES L+ L S + DL+S++ + D+ +N
Sbjct: 215 MDIFSLGCVFAELLLEESPLFTLSQLFSYKAHGSYDLQSVLEQIEDKSTQN 265
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 406 CISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRVSSYW 525
CI +N++ + +H + + NF++N ++ L SS++
Sbjct: 1734 CIDINDEKEAREAAMHAVNLKTNFLANMSHELRTPFSSFY 1773
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 27.1 bits (57), Expect = 2.5
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +1
Query: 232 GWRKWTNRKETVDQKSIPSVDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECI 411
GW TN E D + D L++Y +L +K Y+K+++ NE
Sbjct: 529 GWSLPTNVDEDYD-------NVLLDSLKFYFKLL--TLKLSSGNKNLYFKEIDFLENEWA 579
Query: 412 SLNEQINEAM-SDLHKLTEQYNFVSNKTNA-LHNRVSSY 522
LNE I D+H + Q++++SN +H V S+
Sbjct: 580 FLNEHIYWINGGDIH-MAGQFSYLSNSLLLNVHRYVESH 617
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 385 LEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNAL 501
L + + EC+S E+INE S + +L + N + K L
Sbjct: 575 LTNSQAECVSFQEKINELNSQIDELKLKLNEANKKYQEL 613
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 482 ETKLYCSVSLCRSDIASLICSFKEIHSFL 396
E Y +V+ CR ++ +C+ +H+FL
Sbjct: 70 EPNEYLTVTACRRNLVGDVCAIIRVHAFL 98
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 111 KKYKASYCCGNRLKIHLRHSTRTRGKRFWILNL*F*ELMMRVEKMDQ*KRDC*PKIYTIC 290
KK Y C N+L ++R + + G+ NL + + V+KMD R+ + T+
Sbjct: 153 KKDAYEYSC-NKLNSYMRQTKKMTGRELDKYNLKIRQAALAVKKMDAEYRETNELLLTVT 211
Query: 291 R 293
R
Sbjct: 212 R 212
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 534 NKLSGIGDDIKKRLHYFTQVEHLSQRLNSP 623
NKL+G D+K++L QVE L Q+ +P
Sbjct: 2292 NKLTGKDFDLKEQLPVKAQVEKLIQQATAP 2321
>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 370 CYYKQLEDRRNECISLNEQINEAMSDLHK-LTEQYNFVSNKTNALH 504
CY K ++D + +NE M+ HK + Y ++++ N+L+
Sbjct: 96 CYAKGMDDIMKHVATYTATMNERMNACHKEYIKMYEALASERNSLY 141
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 252 IGPFSPPSSLTPKIKDSRSKIASLWSELSGASG 154
+GP + P IK RSKI S L+G+ G
Sbjct: 116 LGPIHVYQAFYPLIKKGRSKIIVFTSSLAGSMG 148
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 267 NSLFSIGPFSPPSSLTPKIKDSRSK 193
NS + + P+SPP++ TP S +K
Sbjct: 247 NSAWPLQPYSPPANETPASSSSSAK 271
>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +1
Query: 376 YKQLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRVSSY 522
Y++ D EC++ +++ D + L E + + LH+ +S+Y
Sbjct: 3 YQRAIDSIEECLNKQLRLSSEKVDQYVLIENWTSLVGHLKTLHSLISNY 51
>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 421 EQINEAMSDLHKLTEQYNFVSNKTNALHNRVSSYWLIKIN 540
E + + S L + +QY V + A H RV L +N
Sbjct: 74 EVLTKPFSSLECIVDQYALVGEEDGAAHGRVVDLRLCDVN 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,587
Number of Sequences: 5004
Number of extensions: 59656
Number of successful extensions: 193
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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