Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021711
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0866 + 22006822-22006899,22006997-22007080,22007621-220077... 46 2e-05
03_02_0628 + 9957385-9957888,9957985-9958111,9958541-9958608,995... 33 0.28
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165... 32 0.49
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290... 29 3.5
12_01_0335 - 2583476-2583493,2583919-2583965,2584151-2584274,258... 28 6.0
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 28 6.0
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619 28 6.0
02_05_0135 - 26165263-26165284,26165400-26165458,26165506-261657... 28 8.0
>08_02_0866 +
22006822-22006899,22006997-22007080,22007621-22007719,
22007864-22007908,22008170-22008265,22009150-22009227,
22009864-22009949,22010038-22010104,22010192-22010254,
22010332-22010433,22010559-22010663,22010748-22010840,
22011380-22011468,22012049-22012268,22012816-22012899,
22013221-22013337,22013399-22013473,22013589-22013675,
22013766-22013828,22014833-22014949,22015231-22015323,
22015794-22015919,22015992-22016092,22016917-22016996,
22017023-22017093,22017200-22017256,22017430-22017573
Length = 839
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/57 (29%), Positives = 38/57 (66%)
Frame = +3
Query: 513 EQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLNSPTMSVNSDAFFNVLAKIDECL 683
+QLL ++ +L + ++ RL+YF ++E++S S TM++ ++ F +L ++D+C+
Sbjct: 132 DQLLLEKQRLIEFAEALRSRLNYFDELENVSTSFYSQTMNIGNEQFLPLLKRLDDCI 188
>03_02_0628 +
9957385-9957888,9957985-9958111,9958541-9958608,
9958695-9958772,9958885-9958949,9959130-9959196,
9959344-9959526,9959690-9959746,9959857-9959952,
9960061-9960219
Length = 467
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 382 QLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNK 489
+L++++NECI+ E+ N S L L +QYN K
Sbjct: 264 KLDEQKNECIAQLEENNLLRSKLKDLADQYNITQQK 299
>02_01_0252 -
1657268-1657692,1657727-1658445,1658761-1659089,
1659223-1659375,1659430-1659561,1659748-1659852,
1660020-1660193,1660283-1660352,1660458-1660639,
1660738-1660847,1660948-1661052,1661153-1661231,
1662128-1662168,1662283-1662358,1662455-1662589
Length = 944
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 235 WRKWTNRKETVDQKSIPSVDTTYDFLEWY 321
WR W R E V +K+ P+++++ FLE Y
Sbjct: 723 WRNWFVRNEIVHEKTPPTIESSKRFLESY 751
>07_03_0502 +
18826595-18826660,18826815-18826885,18828963-18829056,
18829575-18831521
Length = 725
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 235 WRKWTNRKETVDQKSIPSVDTTYDFLEWY 321
WR W NR E KS P V ++ F+ Y
Sbjct: 495 WRIWYNRNEIYHGKSAPPVSVSHRFIVSY 523
>12_01_0335 -
2583476-2583493,2583919-2583965,2584151-2584274,
2584421-2584665,2585281-2585404,2585424-2585456
Length = 196
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 337 HHRVAHTIPKSHMLYLQMV 281
HH AH++P H++YL V
Sbjct: 166 HHHYAHSLPSVHIIYLSSV 184
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 285 WYRFLVNSLFSIGPFSPPSSLTPKIKDSRSKIASLWSEL-SGASGFSDDSHNNNL 124
W L L PFSPP + K +++ S++ +L E + S S++S NL
Sbjct: 224 WVSVLAERLLESVPFSPPRIVALKGREAASELINLNKETEASCSNRSENSSEINL 278
>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
Length = 398
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +3
Query: 534 NKLSGIGDDIKKRLHYFTQVEH-LSQRLN 617
N L GDD+++RL++FT ++ L++RL+
Sbjct: 239 NNLLSDGDDLEERLNFFTSLDRTLNERLD 267
>02_05_0135 -
26165263-26165284,26165400-26165458,26165506-26165721,
26166309-26166362,26167029-26167123,26167220-26167317,
26167413-26167555,26167900-26168031,26168695-26168823,
26169370-26169831
Length = 469
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 104 SLKEIQSKLLLWESSENPLAPLNSDQREAILDLESLILGVNDEGGENG 247
S+K + LL ++ +P+AP RE I + +L V +GG G
Sbjct: 341 SIKNVSIPLLCIQADNDPIAPSRGIPREDIKANPNCLLIVTPQGGHLG 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,266,812
Number of Sequences: 37544
Number of extensions: 331944
Number of successful extensions: 1014
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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