Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021711
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)                 40   0.002
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        29   2.7  
SB_47358| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-09)          29   4.7  
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_3990| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)          28   6.2  
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  28   6.2  
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)         28   6.2  
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        28   8.1  
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)                     28   8.1  

>SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)
          Length = 530

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/25 (60%), Positives = 23/25 (92%)
 Frame = +3

Query: 609 RLNSPTMSVNSDAFFNVLAKIDECL 683
           +LNSPT+SVNS++F  +LA++DEC+
Sbjct: 1   KLNSPTLSVNSESFVPLLARLDECI 25


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/87 (24%), Positives = 40/87 (45%)
 Frame = +1

Query: 265  VDQKSIPSVDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMS 444
            V  K     D   DF E  + L  D+++ E    Q   K+ EDR +E   L + I +  S
Sbjct: 811  VYNKKCKPADIKQDFQE--QDLAVDSLQKEQKKLQ---KRCEDREDEIRQLRQIIEDKES 865

Query: 445  DLHKLTEQYNFVSNKTNALHNRVSSYW 525
            D+ +   +   + ++ + L+ +++  W
Sbjct: 866  DIEEQVMELIHLRDQIDELNRQLTEIW 892


>SB_47358| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-09)
          Length = 535

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 150 KIHLRHSTRTRGKRFW 197
           KI+L+H TRTR  RFW
Sbjct: 220 KIYLKHKTRTRYIRFW 235


>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1388

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 259 ETVDQKSIPSVDTTYDFLEWYERLCDDNMKTED 357
           E  D     S+D  +D++ +Y  L DD + +ED
Sbjct: 51  ELTDTPQFASLDELFDYINYYSNLEDDCVSSED 83


>SB_3990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 232 GWRKWTNRKETVDQKSIPSVDTTYDFLEWYERLCDDNMKTED 357
           GW + + R+  +D   IP+     D LE  E  C+DN    D
Sbjct: 146 GWSRSSQRQALIDYALIPNYPKPDDDLESAEVTCNDNEFNSD 187


>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 515 LTLLCRAFVLFETKLYCSVSLCRSDIASLICSFKEIHSFL 396
           L++LC   +  ET+L    S CR +++ LI SFK +  F+
Sbjct: 350 LSVLCAVVMCRETRLSICQSTCRQNLSVLI-SFKRVCRFV 388


>SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)
          Length = 396

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 379 KQLEDRRNECISLNEQINEAMSDLHKLTEQ 468
           KQ+E R N+  ++ EQI E  S+L +  +Q
Sbjct: 216 KQIEPRENDIKAMKEQIQEMESELERFHKQ 245


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 379 KQLEDRRNECISLNEQINEAMSDLHKLTEQ 468
           KQ+E R N+  ++ EQI E  S+L +  +Q
Sbjct: 662 KQIEPRENDIKAMKEQIQEMESELERFHKQ 691


>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
          Length = 1177

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 376 YKQLEDRRNECISLNEQINEAMSDLHK 456
           +KQ+E+R  EC SL +++ +   +L K
Sbjct: 494 HKQIEEREKECKSLRDEVRKLRDNLSK 520


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/48 (18%), Positives = 27/48 (56%)
 Frame = +1

Query: 379 KQLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRVSSY 522
           K  ED +NEC++L+E + +  ++  ++ ++   +  +   L + ++ +
Sbjct: 477 KDREDLKNECLALSETVTKIANEKREMEKEIEKLEEENKKLVSEINDF 524


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 23/68 (33%), Positives = 32/68 (47%)
 Frame = +1

Query: 271 QKSIPSVDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDL 450
           QK +  V T Y+     ER   D +  ED+  Q YYKQL D +++     EQ N+     
Sbjct: 626 QKQVKEVQTNYNITS-EER---DRIN-EDL--QSYYKQLSDLQSKYNVCEEQRNDFQKQA 678

Query: 451 HKLTEQYN 474
             L +Q N
Sbjct: 679 SGLKQQSN 686


>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
          Length = 1447

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 382 QLEDRRNECISLNEQINEAMSDLHKLTE-QYNFVSNKTNAL-HNRVSSYWL-IKINYLV* 552
           ++   + EC +L  Q+N A +DL  + E ++   S K N L   + SS  L  KIN L  
Sbjct: 560 KIRSLQEECKNLESQLNMANTDLKNIREKEFKLNSEKENLLTEGKTSSQKLQSKINTLTD 619

Query: 553 E 555
           E
Sbjct: 620 E 620


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,736,662
Number of Sequences: 59808
Number of extensions: 413521
Number of successful extensions: 1242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)