Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021711
(688 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC038953-1|AAH38953.1| 444|Homo sapiens COG3 protein protein. 71 4e-12
AL606514-2|CAH73267.1| 828|Homo sapiens component of oligomeric... 71 4e-12
AL139326-1|CAH72888.1| 828|Homo sapiens component of oligomeric... 71 4e-12
AF349676-1|AAK66974.1| 828|Homo sapiens vesicle docking protein... 71 4e-12
AF332595-1|AAK06848.1| 828|Homo sapiens tethering factor SEC34 ... 71 4e-12
L07557-1|AAA35542.1| 874|Homo sapiens oncogenic protein-associa... 31 3.8
U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein. 30 8.9
U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protei... 30 8.9
AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F, 3... 30 8.9
AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F, 3... 30 8.9
>BC038953-1|AAH38953.1| 444|Homo sapiens COG3 protein protein.
Length = 444
Score = 70.9 bits (166), Expect = 4e-12
Identities = 32/73 (43%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Frame = +3
Query: 471 QFCFK*NKCST--QQSEQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLNSPTMSVNSD 644
Q+ F NK T + EQLL +Q++L + ++I+++L YF ++E ++ +LNSPT+SVNSD
Sbjct: 161 QYLFVSNKTGTLHEACEQLLKEQSELVDLAENIQQKLSYFNELETINTKLNSPTLSVNSD 220
Query: 645 AFFNVLAKIDECL 683
F +LAK+D+C+
Sbjct: 221 GFIPMLAKLDDCI 233
Score = 48.4 bits (110), Expect = 2e-05
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 289 VDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDLHKLTEQ 468
++T F W+ +L + E Y+ L + +C ++ +N A+ L L +Q
Sbjct: 102 IETAQQFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQCDAILNDVNSALQHLESLQKQ 161
Query: 469 YNFVSNKTNALH 504
Y FVSNKT LH
Sbjct: 162 YLFVSNKTGTLH 173
>AL606514-2|CAH73267.1| 828|Homo sapiens component of oligomeric
golgi complex 3 protein.
Length = 828
Score = 70.9 bits (166), Expect = 4e-12
Identities = 32/73 (43%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Frame = +3
Query: 471 QFCFK*NKCST--QQSEQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLNSPTMSVNSD 644
Q+ F NK T + EQLL +Q++L + ++I+++L YF ++E ++ +LNSPT+SVNSD
Sbjct: 161 QYLFVSNKTGTLHEACEQLLKEQSELVDLAENIQQKLSYFNELETINTKLNSPTLSVNSD 220
Query: 645 AFFNVLAKIDECL 683
F +LAK+D+C+
Sbjct: 221 GFIPMLAKLDDCI 233
Score = 48.4 bits (110), Expect = 2e-05
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 289 VDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDLHKLTEQ 468
++T F W+ +L + E Y+ L + +C ++ +N A+ L L +Q
Sbjct: 102 IETAQQFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQCDAILNDVNSALQHLESLQKQ 161
Query: 469 YNFVSNKTNALH 504
Y FVSNKT LH
Sbjct: 162 YLFVSNKTGTLH 173
>AL139326-1|CAH72888.1| 828|Homo sapiens component of oligomeric
golgi complex 3 protein.
Length = 828
Score = 70.9 bits (166), Expect = 4e-12
Identities = 32/73 (43%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Frame = +3
Query: 471 QFCFK*NKCST--QQSEQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLNSPTMSVNSD 644
Q+ F NK T + EQLL +Q++L + ++I+++L YF ++E ++ +LNSPT+SVNSD
Sbjct: 161 QYLFVSNKTGTLHEACEQLLKEQSELVDLAENIQQKLSYFNELETINTKLNSPTLSVNSD 220
Query: 645 AFFNVLAKIDECL 683
F +LAK+D+C+
Sbjct: 221 GFIPMLAKLDDCI 233
Score = 48.4 bits (110), Expect = 2e-05
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 289 VDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDLHKLTEQ 468
++T F W+ +L + E Y+ L + +C ++ +N A+ L L +Q
Sbjct: 102 IETAQQFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQCDAILNDVNSALQHLESLQKQ 161
Query: 469 YNFVSNKTNALH 504
Y FVSNKT LH
Sbjct: 162 YLFVSNKTGTLH 173
>AF349676-1|AAK66974.1| 828|Homo sapiens vesicle docking protein
SEC34 protein.
Length = 828
Score = 70.9 bits (166), Expect = 4e-12
Identities = 32/73 (43%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Frame = +3
Query: 471 QFCFK*NKCST--QQSEQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLNSPTMSVNSD 644
Q+ F NK T + EQLL +Q++L + ++I+++L YF ++E ++ +LNSPT+SVNSD
Sbjct: 161 QYLFVSNKTGTLHEACEQLLKEQSELVDLAENIQQKLSYFNELETINTKLNSPTLSVNSD 220
Query: 645 AFFNVLAKIDECL 683
F +LAK+D+C+
Sbjct: 221 GFIPMLAKLDDCI 233
Score = 50.4 bits (115), Expect = 6e-06
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +1
Query: 289 VDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDLHKLTEQ 468
++T ++F W+ +L + E Y+ L + +C ++ +N A+ L L +Q
Sbjct: 102 IETAHEFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQCDAILNDVNSALQHLESLQKQ 161
Query: 469 YNFVSNKTNALH 504
Y FVSNKT LH
Sbjct: 162 YLFVSNKTGTLH 173
>AF332595-1|AAK06848.1| 828|Homo sapiens tethering factor SEC34
protein.
Length = 828
Score = 70.9 bits (166), Expect = 4e-12
Identities = 32/73 (43%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Frame = +3
Query: 471 QFCFK*NKCST--QQSEQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLNSPTMSVNSD 644
Q+ F NK T + EQLL +Q++L + ++I+++L YF ++E ++ +LNSPT+SVNSD
Sbjct: 161 QYLFVSNKTGTLHEACEQLLKEQSELVDLAENIQQKLSYFNELETINTKLNSPTLSVNSD 220
Query: 645 AFFNVLAKIDECL 683
F +LAK+D+C+
Sbjct: 221 GFIPMLAKLDDCI 233
Score = 48.4 bits (110), Expect = 2e-05
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 289 VDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDLHKLTEQ 468
++T F W+ +L + E Y+ L + +C ++ +N A+ L L +Q
Sbjct: 102 IETAQQFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQCDAILNDVNSALQHLESLQKQ 161
Query: 469 YNFVSNKTNALH 504
Y FVSNKT LH
Sbjct: 162 YLFVSNKTGTLH 173
>L07557-1|AAA35542.1| 874|Homo sapiens oncogenic protein-associated
protein protein.
Length = 874
Score = 31.1 bits (67), Expect = 3.8
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 247 TNRKETVDQKSIP-SVDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNE 423
TN E D++ IP S + T L ER ++ + + + K L D R I E
Sbjct: 389 TNHNEEDDEEPIPESSELTLQELLGEERRNKKGLRVDPLETELGVKTL-DCRKPLIPFEE 447
Query: 424 QINEAMSDLHKLTEQYNFVSNKT 492
INE ++++ ++ + Y F +T
Sbjct: 448 FINEPLNEVLEMDKDYTFFKVET 470
>U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein.
Length = 3113
Score = 29.9 bits (64), Expect = 8.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 334 DDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRV 513
+ MK + +Q QLE + E I + +N+ +L + T QY+ S K AL ++
Sbjct: 305 EKEMKGQVNKFQELQLQLEKAKVELIEKEKVLNKCRDELVRTTAQYDQASTKYTALEQKL 364
>U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protein
protein.
Length = 3210
Score = 29.9 bits (64), Expect = 8.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 334 DDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRV 513
+ MK + +Q QLE + E I + +N+ +L + T QY+ S K AL ++
Sbjct: 305 EKEMKGQVNKFQELQLQLEKAKVELIEKEKVLNKCRDELVRTTAQYDQASTKYTALEQKL 364
>AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 29.9 bits (64), Expect = 8.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 334 DDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRV 513
+ MK + +Q QLE + E I + +N+ +L + T QY+ S K AL ++
Sbjct: 305 EKEMKGQVNKFQELQLQLEKAKVELIEKEKVLNKCRDELVRTTAQYDQASTKYTALEQKL 364
>AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 29.9 bits (64), Expect = 8.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 334 DDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRV 513
+ MK + +Q QLE + E I + +N+ +L + T QY+ S K AL ++
Sbjct: 305 EKEMKGQVNKFQELQLQLEKAKVELIEKEKVLNKCRDELVRTTAQYDQASTKYTALEQKL 364
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,804,600
Number of Sequences: 237096
Number of extensions: 1916141
Number of successful extensions: 4679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4679
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -