Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021711
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024852-4|AAT81182.1| 794|Caenorhabditis elegans Conserved oli... 42 3e-04
AB212858-1|BAE66673.1| 792|Caenorhabditis elegans COGC-3 protein. 42 3e-04
Z77663-9|CAB01203.1| 239|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL110485-23|CAB60377.3| 770|Caenorhabditis elegans Hypothetical... 30 1.8
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 30 1.8
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 30 1.8
AF003739-7|AAB58068.1| 339|Caenorhabditis elegans Hypothetical ... 30 1.8
Z75545-6|CAA99888.3| 649|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical pr... 29 2.4
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL008986-2|CAA15621.3| 649|Caenorhabditis elegans Hypothetical ... 29 2.4
Z81484-9|CAE11297.1| 325|Caenorhabditis elegans Hypothetical pr... 29 3.1
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 28 5.4
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 28 5.4
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 28 5.4
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 28 5.4
Z69787-11|CAI79148.1| 165|Caenorhabditis elegans Hypothetical p... 28 7.2
Z82070-3|CAB04912.1| 75|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AC024852-4|AAT81182.1| 794|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 3, isoform a
protein.
Length = 794
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 495 CSTQQS-EQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLNSPTMSVNSDAFFNVLAKI 671
CS + ++ LA+Q LS IK L+YF Q + + ++L+ + V +F +L I
Sbjct: 102 CSLHDACDRALAEQTSLSTGSQLIKTNLYYFKQADAIMKKLSVAKLMVTGHSFAAILVSI 161
Query: 672 DECL 683
DECL
Sbjct: 162 DECL 165
>AB212858-1|BAE66673.1| 792|Caenorhabditis elegans COGC-3 protein.
Length = 792
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 495 CSTQQS-EQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLNSPTMSVNSDAFFNVLAKI 671
CS + ++ LA+Q LS IK L+YF Q + + ++L+ + V +F +L I
Sbjct: 102 CSLHDACDRALAEQTSLSTGSQLIKTNLYYFKQADAIMKKLSVAKLMVTGHSFAAILVSI 161
Query: 672 DECL 683
DECL
Sbjct: 162 DECL 165
>Z77663-9|CAB01203.1| 239|Caenorhabditis elegans Hypothetical
protein F53F4.10 protein.
Length = 239
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 495 CSTQQSEQLLADQNKLSGI--GDDIKKRLHYFTQVEHLSQRLNSPTMSVNSDAFFNVLAK 668
C + +E + K GI G+ K L +VE L +N+P + +N D F ++ K
Sbjct: 129 CMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPK 188
Query: 669 -IDECLD 686
++E LD
Sbjct: 189 DVNEILD 195
>AL110485-23|CAB60377.3| 770|Caenorhabditis elegans Hypothetical
protein Y46G5A.29 protein.
Length = 770
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 568 KGFIISRKWSICRNASTAQLCRSIVTHSLMYWPR 669
K F+ KW R+ Q +I T +++YW +
Sbjct: 148 KKFLAEAKWQATRDVGNVQFVATIATENVVYWEK 181
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 470 YCSVSLCRSDIASLICSFKEIHSFL 396
Y S + CR ++A +CS +HSFL
Sbjct: 139 YVSATACRRNLAGDVCSIVRLHSFL 163
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 470 YCSVSLCRSDIASLICSFKEIHSFL 396
Y S + CR ++A +CS +HSFL
Sbjct: 139 YVSATACRRNLAGDVCSIVRLHSFL 163
>AF003739-7|AAB58068.1| 339|Caenorhabditis elegans Hypothetical
protein M01D7.1 protein.
Length = 339
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -1
Query: 481 KQNCIALLVYADPTSPR*SVRLKKYIHFFYLLIVYNSI----GKGHLQSSYYHHRVAHTI 314
K +C+ +L+ TS + +KK Y LIV N + G G ++ +H R+
Sbjct: 47 KNSCVFILIKLSKTSMKIRTDIKKVRRKMYKLIVSNHLEYHPGAGIVEPPRFHQRILIVE 106
Query: 313 PKSHML 296
KS +L
Sbjct: 107 AKSDVL 112
>Z75545-6|CAA99888.3| 649|Caenorhabditis elegans Hypothetical
protein H37N21.1 protein.
Length = 649
Score = 29.5 bits (63), Expect = 2.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 238 RKWTNRKETVDQKSIPSVDTTY 303
++W+ R+E V Q+ +P +D Y
Sbjct: 39 KRWSKRREQVKQRDVPGIDVAY 60
>Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical
protein T23G7.4 protein.
Length = 884
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/93 (25%), Positives = 43/93 (46%)
Frame = +1
Query: 265 VDQKSIPSVDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMS 444
+D +S P+ D + W E+ D M+T+ + +LED N+ ++IN
Sbjct: 364 LDPESDPTWDCITSYYVWLEKSLWD-MQTQFLEKA----KLEDLENQ-----QRINSQNH 413
Query: 445 DLHKLTEQYNFVSNKTNALHNRVSSYWLIKINY 543
+ K E NFV+ L +++ S+W + Y
Sbjct: 414 LITKTNELQNFVTTLVELLLSKLPSFWKLANTY 446
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 379 KQLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRVSSYWL 528
+QLED + +LN + S L +L + + + +LH++VS+Y L
Sbjct: 1299 RQLEDAEAQLCALNRIKQQQHSQLEELKRTLDQETRERQSLHSQVSNYQL 1348
>AL008986-2|CAA15621.3| 649|Caenorhabditis elegans Hypothetical
protein H37N21.1 protein.
Length = 649
Score = 29.5 bits (63), Expect = 2.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 238 RKWTNRKETVDQKSIPSVDTTY 303
++W+ R+E V Q+ +P +D Y
Sbjct: 39 KRWSKRREQVKQRDVPGIDVAY 60
>Z81484-9|CAE11297.1| 325|Caenorhabditis elegans Hypothetical
protein C47A10.10 protein.
Length = 325
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 167 VAQVDFQT-IPTTITCFVFLLNSSYPCFEYGIKG*DKFIFAILIILLGNY*SCVLI 3
V ++FQ IP I C F++N P F ++G I I+I + G + V++
Sbjct: 238 VRSLNFQVAIPLFIVCIPFMVNVFIPMFSTDLQGTTNLICIIIISMHGVLSTLVMV 293
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +1
Query: 250 NRKETVDQKSIPS-VDTTYDFL-EWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNE 423
N + VD + S V T FL E E+L DN D LE ++E NE
Sbjct: 1310 NMQRAVDSMDVSSSVGVTLRFLKERIEQLEADNADLSDA--------LEKAKDELRQRNE 1361
Query: 424 QINEAMSDLHKLTEQYNFVSNKTNALHNRVSS 519
++ + + ++ Q ++ + N + NR++S
Sbjct: 1362 KLADRQMVIERVERQLVHITEERNTIENRMTS 1393
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +1
Query: 382 QLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRVSSY 522
+++ + E L+EQ+NE + + E+Y+ + K +AL V+++
Sbjct: 656 EIDILKAELTRLHEQVNERTRQISEANEKYDDAARKNDALLEDVATW 702
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +1
Query: 250 NRKETVDQKSIPS-VDTTYDFL-EWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNE 423
N + VD + S V T FL E E+L DN D LE ++E NE
Sbjct: 1310 NMQRAVDSMDVSSSVGVTLRFLKERIEQLEADNADLSDA--------LEKAKDELRQRNE 1361
Query: 424 QINEAMSDLHKLTEQYNFVSNKTNALHNRVSS 519
++ + + ++ Q ++ + N + NR++S
Sbjct: 1362 KLADRQMVIERVERQLVHITEERNTIENRMTS 1393
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +1
Query: 382 QLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRVSSY 522
+++ + E L+EQ+NE + + E+Y+ + K +AL V+++
Sbjct: 656 EIDILKAELTRLHEQVNERTRQISEANEKYDDAARKNDALLEDVATW 702
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +1
Query: 250 NRKETVDQKSIPS-VDTTYDFL-EWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNE 423
N + VD + S V T FL E E+L DN D LE ++E NE
Sbjct: 1070 NMQRAVDSMDVSSSVGVTLRFLKERIEQLEADNADLSDA--------LEKAKDELRQRNE 1121
Query: 424 QINEAMSDLHKLTEQYNFVSNKTNALHNRVSS 519
++ + + ++ Q ++ + N + NR++S
Sbjct: 1122 KLADRQMVIERVERQLVHITEERNTIENRMTS 1153
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +1
Query: 382 QLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRVSSY 522
+++ + E L+EQ+NE + + E+Y+ + K +AL V+++
Sbjct: 416 EIDILKAELTRLHEQVNERTRQISEANEKYDDAARKNDALLEDVATW 462
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +1
Query: 250 NRKETVDQKSIPS-VDTTYDFL-EWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNE 423
N + VD + S V T FL E E+L DN D LE ++E NE
Sbjct: 1310 NMQRAVDSMDVSSSVGVTLRFLKERIEQLEADNADLSDA--------LEKAKDELRQRNE 1361
Query: 424 QINEAMSDLHKLTEQYNFVSNKTNALHNRVSS 519
++ + + ++ Q ++ + N + NR++S
Sbjct: 1362 KLADRQMVIERVERQLVHITEERNTIENRMTS 1393
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +1
Query: 382 QLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRVSSY 522
+++ + E L+EQ+NE + + E+Y+ + K +AL V+++
Sbjct: 656 EIDILKAELTRLHEQVNERTRQISEANEKYDDAARKNDALLEDVATW 702
>Z69787-11|CAI79148.1| 165|Caenorhabditis elegans Hypothetical
protein C44C10.12 protein.
Length = 165
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +1
Query: 298 TYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDLHKLTEQYNF 477
TY+ + + R+ + KT DVP + RN C ++ E + D ++L E+
Sbjct: 56 TYEQIGHFVRIMKNREKTHDVP--------NNWRNVCTAI-----ETIMDEYQLMERKKK 102
Query: 478 VSNKTNALHNRVSSYWLIKI 537
V + ++ HNR SS K+
Sbjct: 103 VQMQQHSTHNRQSSDICFKV 122
>Z82070-3|CAB04912.1| 75|Caenorhabditis elegans Hypothetical
protein W04E12.3 protein.
Length = 75
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 382 QLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRVSSYWLI 531
+L+++ +C E+ NE SDL + +E + + +R S +WLI
Sbjct: 3 ELQEKEAQCNPREEEENE-FSDLSENSENLQNDTEIVEMMTSRTSKFWLI 51
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,682,212
Number of Sequences: 27780
Number of extensions: 322850
Number of successful extensions: 1048
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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